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AP018399.1__BBA65455.1__X__00307

Bact-Vir

AP018399.1__BBA65455.1__X__00307

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

65.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-92
PDB
D2 high residues 104-178
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b7kC02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.68 48.0 4.19e-01 73.3% 94.5%
1pn2D02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.66 47.0 3.95e-01 73.3% 89.5%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 38.0 3.74e-01 74.7% 51.9%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 41.0 3.39e-01 70.7% 36.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 5.19e-01 84.0% 100.0%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.61 50.0 4.69e-01 88.0% 95.6%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 42.0 3.43e-01 74.7% 84.7%
1vq0A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.60 45.0 3.20e-01 100.0% 26.2%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 45.0 3.46e-01 81.3% 38.7%
3qldA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 52.0 4.16e-01 100.0% 94.7%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.57 41.0 3.18e-01 100.0% 32.9%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.57 50.0 3.65e-01 98.7% 100.0%
4k2xB02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 37.0 3.60e-01 78.7% 62.2%
4zohB03 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 45.0 4.14e-01 90.7% 100.0%
2og9A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 49.0 4.09e-01 98.7% 95.4%
1sjdB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 50.0 4.12e-01 100.0% 97.7%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 45.0 3.64e-01 94.7% 87.7%
3q45A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 49.0 4.08e-01 98.7% 97.6%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 44.0 3.73e-01 88.0% 97.5%
2qgyB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 46.0 3.78e-01 98.7% 94.9%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.51 44.0 3.37e-01 96.0% 46.5%
1ahsA00 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 3.17e-01 80.0% 66.7%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.50 43.0 3.16e-01 98.7% 67.0%
1v9nA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.50 43.0 3.14e-01 100.0% 55.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705484 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.76 50.0 5.66e-01 96.0% 90.9%
3593797 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.75 50.0 5.64e-01 97.3% 92.7%
3606398 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.73 48.0 5.54e-01 97.3% 92.7%
3270868 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.73 49.0 5.54e-01 96.0% 94.5%
3714918 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.72 47.0 5.36e-01 96.0% 90.9%
4048813 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.71 47.0 5.35e-01 94.7% 92.7%
3600188 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.70 45.0 5.09e-01 97.3% 90.9%
4620763 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.69 47.0 4.00e-01 72.0% 90.4%
3714926 3529.1.1.1 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault 0.68 42.0 4.94e-01 90.7% 92.0%
3225762 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.68 54.0 5.45e-01 85.3% 85.3%
3484477 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 57.0 5.93e-01 98.7% 100.0%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 5.63e-01 89.3% 100.0%
4927081 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.64 56.0 4.52e-01 96.0% 93.8%
4118011 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.64 53.0 5.11e-01 90.7% 81.2%
3216019 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 5.33e-01 84.0% 100.0%
3473172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.32e-01 97.3% 91.3%
1144827 4.1.1.79 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3601 0.61 50.0 4.70e-01 88.0% 96.6%
3753550 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 37.0 3.12e-01 98.7% 39.2%
4401923 2484.1.1.60 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_E_G 0.55 48.0 4.04e-01 93.3% 88.3%
3579399 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 36.0 3.32e-01 100.0% 51.0%
4010765 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 42.0 3.55e-01 84.0% 94.4%
3972098 10.32.1.239 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FNIII-A_GpJ 0.54 47.0 3.91e-01 98.7% 74.8%
5034467 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.53 44.0 3.19e-01 93.3% 81.3%
4144742 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 42.0 3.53e-01 84.0% 95.8%
4505784 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.53 41.0 3.47e-01 82.7% 99.2%
3215101 220.1.1.159 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_met_RdRP 0.53 45.0 3.34e-01 100.0% 63.6%
4969849 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.52 41.0 3.37e-01 84.0% 97.0%
1870610 2484.7.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Uncharacterized protein PF2046 › Uncharacterized protein PF2046 › DUF4152 0.52 44.0 3.11e-01 92.0% 74.3%
4628548 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.52 41.0 3.41e-01 84.0% 95.2%
5027407 218.1.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.51 46.0 3.94e-01 100.0% 63.7%
4671779 276.1.1.1 ↗ a+b three layers › L-sulfolactate dehydrogenase-like › L-sulfolactate dehydrogenase-like › L-sulfolactate dehydrogenase-like › Ldh_2 0.51 44.0 2.95e-01 100.0% 42.0%
1030893 11.26.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Viral chemokine binding protein m3 › Viral chemokine binding protein m3 › M3 0.51 44.0 3.36e-01 96.0% 46.2%
3688401 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.51 41.0 2.86e-01 93.3% 65.5%
5022112 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.50 43.0 3.28e-01 98.7% 95.8%
3514135 5084.1.1.19 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › BCSC_C 0.50 43.0 3.41e-01 98.7% 88.5%
4978729 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.50 44.0 3.08e-01 98.7% 100.0%