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AP018399.1__BBA65535.1__X__00387

Bact-Vir

AP018399.1__BBA65535.1__X__00387

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

View cluster (51 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-95
PDB
Domain cluster: rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.92 46.0 5.62e-01 85.6% 75.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.92 47.0 5.46e-01 86.7% 69.7%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.91 73.0 7.96e-01 98.9% 98.7%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.84 52.0 5.68e-01 90.0% 75.7%
4f7uF00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.83 53.0 5.89e-01 87.8% 80.8%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 52.0 5.99e-01 88.9% 86.8%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 59.0 5.18e-01 93.3% 53.8%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 50.0 5.77e-01 88.9% 87.9%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 50.0 5.59e-01 86.7% 81.7%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 54.0 5.81e-01 88.9% 83.1%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 49.0 4.76e-01 87.8% 59.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 46.0 4.77e-01 96.7% 69.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 37.0 4.10e-01 87.8% 65.2%
1d3bB00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.53e-01 96.7% 88.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.84e-01 86.7% 85.0%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 4.49e-01 85.6% 93.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 29.0 3.29e-01 80.0% 67.2%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.58e-01 84.4% 73.4%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 32.0 3.69e-01 81.1% 89.2%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4813032 4.1.1.328 ↗ beta barrels › SH3 › SH3 › SH3 › Sm_like 0.90 72.0 7.65e-01 100.0% 94.9%
135648 4.1.1.142 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.89 46.0 5.48e-01 86.7% 72.3%
3172870 4.1.1.67 ↗ beta barrels › SH3 › SH3 › SH3 › FDF 0.88 52.0 5.15e-01 88.9% 56.8%
3602785 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 51.0 6.17e-01 88.9% 90.0%
2167708 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 50.0 5.85e-01 88.9% 83.1%
3473732 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 51.0 5.89e-01 88.9% 84.6%
3783301 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 51.0 4.86e-01 88.9% 53.3%
5038431 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 49.0 5.52e-01 85.6% 80.0%
4024727 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 52.0 4.96e-01 88.9% 58.7%
5044296 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 55.0 5.88e-01 88.9% 83.3%
3703320 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.77 56.0 5.96e-01 88.9% 84.8%
3277139 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.76 52.0 4.70e-01 88.9% 54.8%
3785079 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.74 58.0 4.87e-01 93.3% 51.0%
3786143 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.73 57.0 5.42e-01 94.4% 70.5%
5081091 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.88e-01 90.0% 86.3%
4010995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.54e-01 88.9% 90.7%
5060199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.58e-01 90.0% 86.7%
3197566 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.67 56.0 5.42e-01 88.9% 79.0%
3741267 207.1.1.454 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › DIPSY 0.64 35.0 4.34e-01 100.0% 94.0%
5069300 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.64 54.0 5.08e-01 88.9% 86.7%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 45.0 4.79e-01 93.3% 83.7%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.62 45.0 4.75e-01 88.9% 83.7%
3503000 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.66e-01 90.0% 90.6%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.26e-01 100.0% 88.2%
3411238 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 48.0 3.39e-01 100.0% 98.6%
3174327 4.1.1.41 ↗ beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.52 32.0 2.53e-01 92.2% 28.2%
4323235 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 43.0 4.04e-01 92.2% 75.5%
4028518 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.51 35.0 3.12e-01 73.3% 66.7%
3800269 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.50 39.0 3.36e-01 84.4% 97.3%