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AP018399.1__BBA65543.1__X__00395

Bact-Vir

AP018399.1__BBA65543.1__X__00395

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-56
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 58.0 5.20e-01 97.5% 58.9%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 4.98e-01 90.0% 54.4%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.73 49.0 4.06e-01 70.0% 38.4%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 59.0 5.18e-01 95.0% 62.9%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.71 55.0 5.05e-01 90.0% 64.8%
4a0fB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.71 53.0 3.53e-01 85.0% 60.4%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 54.0 3.89e-01 95.0% 29.0%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.68 55.0 3.12e-01 92.5% 7.9%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 4.40e-01 97.5% 44.4%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.82e-01 90.0% 72.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 50.0 4.55e-01 92.5% 64.5%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.65 46.0 3.51e-01 77.5% 41.6%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.41e-01 95.0% 56.1%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 53.0 4.26e-01 100.0% 92.4%
3r6fA00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.60 52.0 3.62e-01 100.0% 62.3%
4by6C00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.60 43.0 2.93e-01 95.0% 19.3%
6n3oA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 51.0 3.97e-01 100.0% 83.3%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.38e-01 100.0% 49.6%
1xovA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 47.0 4.02e-01 100.0% 58.3%
2a6hC05 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 47.0 3.95e-01 100.0% 74.7%
4ljzC06 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 47.0 3.97e-01 100.0% 81.3%
1vwxH02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.55 39.0 3.17e-01 90.0% 80.6%
6ofsA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.55 43.0 2.82e-01 100.0% 95.8%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 40.0 3.15e-01 82.5% 50.5%
1a41A01 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.54 43.0 3.17e-01 95.0% 33.9%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 2.99e-01 95.0% 38.1%
1zarA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 3.60e-01 100.0% 86.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001148 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.89 79.0 6.24e-01 100.0% 65.0%
4668742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 66.0 6.68e-01 97.5% 82.5%
5027131 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.83 71.0 6.28e-01 100.0% 71.7%
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 60.0 5.38e-01 100.0% 58.2%
4579331 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 67.0 5.72e-01 92.5% 58.7%
4929307 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.78 69.0 5.46e-01 100.0% 50.0%
3662854 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.77 65.0 4.25e-01 95.0% 23.0%
3298989 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 65.0 4.66e-01 95.0% 34.5%
3786430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 57.0 5.32e-01 92.5% 66.0%
4825768 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.75 57.0 5.70e-01 85.0% 90.5%
5027607 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.74 51.0 4.10e-01 72.5% 42.7%
3603357 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 5.51e-01 95.0% 67.3%
5000308 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.73 56.0 5.36e-01 90.0% 71.4%
1146672 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.72 55.0 4.05e-01 90.0% 31.5%
5017161 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.70 57.0 4.52e-01 95.0% 45.9%
3511310 4.1.1.224 ↗ beta barrels › SH3 › SH3 › SH3 › Integrase_p58_C 0.69 51.0 5.40e-01 100.0% 94.3%
3626615 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 4.18e-01 95.0% 46.4%
3605452 2003.1.2.157 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Oxidored_FMN 0.68 52.0 2.89e-01 92.5% 6.2%
3900236 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.58e-01 92.5% 58.3%
4962768 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 49.0 3.44e-01 100.0% 27.4%
4206331 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 46.0 3.86e-01 97.5% 74.7%
3722671 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 41.0 3.46e-01 100.0% 60.0%
3227008 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.54 39.0 2.44e-01 92.5% 62.7%
4127839 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 41.0 3.58e-01 100.0% 64.0%
3344486 3343.1.1.2 ↗ alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal 0.52 44.0 2.41e-01 95.0% 13.4%
4886912 3747.1.1.5 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod, LlgE_F_G_D1 0.52 37.0 2.59e-01 82.5% 25.3%
4867166 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.50 33.0 3.40e-01 70.0% 78.9%