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AP018399.1__BBA65575.1__X__00427

Bact-Vir

AP018399.1__BBA65575.1__X__00427

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-73
PDB
Domain cluster: rep: HQ615693.1__AEC53146.1__SCRM01_200__00200__D9-70
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 56.0 4.98e-01 100.0% 51.1%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 55.0 5.81e-01 100.0% 82.1%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 60.0 5.51e-01 100.0% 66.3%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 52.0 5.58e-01 100.0% 87.0%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 4.42e-01 100.0% 39.8%
2budA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 5.04e-01 100.0% 58.7%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.71 58.0 5.92e-01 100.0% 88.9%
1jb3A00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 59.0 4.67e-01 92.2% 78.7%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.69 62.0 6.06e-01 100.0% 91.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.68 61.0 5.31e-01 100.0% 80.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 58.0 5.56e-01 100.0% 83.3%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 58.0 5.58e-01 100.0% 98.6%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.61 56.0 5.22e-01 100.0% 84.8%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 4.36e-01 100.0% 60.0%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.60 54.0 4.58e-01 100.0% 76.2%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.81e-01 100.0% 84.2%
1uirA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.56 39.0 4.14e-01 96.9% 92.3%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 39.0 3.97e-01 96.9% 78.1%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 39.0 4.11e-01 96.9% 94.2%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.27e-01 98.4% 88.7%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 39.0 2.91e-01 76.6% 53.5%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 37.0 3.92e-01 96.9% 87.5%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 37.0 3.94e-01 96.9% 94.1%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 36.0 3.89e-01 96.9% 94.1%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.38e-01 85.9% 76.6%
8dwoJ01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.47e-01 81.2% 90.9%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.51 41.0 3.59e-01 100.0% 56.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3398496 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.80 55.0 5.92e-01 100.0% 83.6%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 57.0 6.14e-01 100.0% 89.1%
647 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 57.0 4.42e-01 100.0% 39.8%
648 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.73 57.0 5.12e-01 100.0% 61.4%
3888349 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.72 53.0 4.15e-01 100.0% 38.5%
3814411 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 56.0 4.67e-01 100.0% 50.5%
3730835 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.70 56.0 4.88e-01 100.0% 57.9%
3410370 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 57.0 5.58e-01 100.0% 82.9%
3624304 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 62.0 5.40e-01 100.0% 82.1%
3700454 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 61.0 5.02e-01 100.0% 90.4%
3430260 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.67 59.0 3.68e-01 96.9% 35.9%
3798523 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 60.0 5.55e-01 100.0% 92.5%
3911348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 3.81e-01 100.0% 38.5%
3923767 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 59.0 5.22e-01 98.4% 77.8%
3177842 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 59.0 4.74e-01 100.0% 59.2%
3580428 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.40e-01 87.5% 95.0%
3589263 2.1.1.222 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_YrrC 0.64 52.0 4.84e-01 89.1% 96.2%
3205674 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.63 56.0 3.63e-01 100.0% 50.2%
3398219 4.1.1.89 ↗ beta barrels › SH3 › SH3 › SH3 › SM-ATX 0.63 53.0 4.69e-01 100.0% 64.2%
3607908 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.63 55.0 3.40e-01 100.0% 26.3%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.62 53.0 5.05e-01 100.0% 80.0%
3594328 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 56.0 4.98e-01 100.0% 71.1%
3721700 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.04e-01 100.0% 60.0%
3472188 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.61 53.0 3.28e-01 96.9% 35.7%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 56.0 4.84e-01 100.0% 72.6%
3591306 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 54.0 5.22e-01 100.0% 88.6%
3597248 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 54.0 4.71e-01 100.0% 96.8%
3707929 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 54.0 4.00e-01 100.0% 45.6%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 54.0 4.80e-01 100.0% 75.6%
3592790 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.59 54.0 4.46e-01 100.0% 65.5%
3267804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 53.0 4.54e-01 100.0% 85.0%
4018672 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.58 51.0 4.28e-01 100.0% 60.9%
4243071 3699.1.1.0 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain 0.58 40.0 4.23e-01 96.9% 87.3%
4456205 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.57 40.0 4.24e-01 96.9% 87.3%
4937878 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.57 47.0 4.33e-01 92.2% 78.8%
4020096 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 50.0 3.91e-01 100.0% 51.4%
5041849 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 39.0 4.14e-01 96.9% 87.3%
4336845 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.56 39.0 3.98e-01 96.9% 80.0%
4971071 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 39.0 4.12e-01 96.9% 89.1%
4961931 2.4.1.7 ↗ beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.55 37.0 2.97e-01 70.3% 99.3%
3987332 3699.1.1.1 ↗ beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N 0.55 39.0 4.05e-01 96.9% 89.1%
4174957 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.54 46.0 3.35e-01 100.0% 38.5%
3516392 519.1.1.1 ↗ a+b two layers › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › mRNA decapping enzyme DcpS N-terminal domain › DcpS 0.54 46.0 3.72e-01 92.2% 82.6%
3839465 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.52 36.0 2.49e-01 96.9% 18.5%
3594572 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 3.25e-01 100.0% 38.1%
3672372 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.51 38.0 3.69e-01 82.8% 80.0%