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AP018399.1__BBA65635.1__X__00487
Bact-VirAP018399.1__BBA65635.1__X__00487
Identity
- Accession:
- AP018399 ↗
- Kingdom:
- phage
Quality
80.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-76
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfA04 | 3.30.1490.180 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase ii | 0.58 | 41.0 | 4.18e-01 | 75.0% | 90.5% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 37.0 | 3.42e-01 | 71.9% | 77.9% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.54 | 36.0 | 3.47e-01 | 70.3% | 100.0% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.53 | 36.0 | 3.53e-01 | 73.4% | 97.3% |
| 1jelP00 | 3.30.1340.10 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like | 0.51 | 35.0 | 3.30e-01 | 73.4% | 71.8% |
| 7nkdA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 38.0 | 3.58e-01 | 78.1% | 77.9% |
| 1i8dA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.51 | 38.0 | 3.49e-01 | 82.8% | 98.9% |
| 2rhqB03 | 3.50.40.10 | Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 | 0.50 | 35.0 | 2.45e-01 | 71.9% | 25.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3222051 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 47.0 | 4.72e-01 | 78.1% | 96.9% |
| 3660419 | 275.1.1.1 ↗ | a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › RNA_pol_Rpb1_2 | 0.57 | 39.0 | 3.49e-01 | 71.9% | 63.2% |
| 4990503 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.56 | 48.0 | 3.93e-01 | 100.0% | 76.8% |
| 4999430 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.55 | 46.0 | 3.91e-01 | 100.0% | 70.0% |
| 5037939 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.55 | 47.0 | 3.63e-01 | 100.0% | 60.6% |
| 4926946 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.55 | 40.0 | 3.74e-01 | 81.2% | 95.3% |
| 3240069 | 4.11.1.2 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 | 0.54 | 45.0 | 3.62e-01 | 100.0% | 82.9% |
| 3711495 | 4951.1.1.1 ↗ | alpha arrays › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › inserted helical subdomain in bacterial RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_2 | 0.53 | 37.0 | 3.87e-01 | 75.0% | 91.7% |