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AP018399.1__BBA65644.1__X__00496

Bact-Vir

AP018399.1__BBA65644.1__X__00496

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

70.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-76
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.67 38.0 3.16e-01 71.1% 31.3%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 49.0 3.14e-01 77.6% 77.8%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.65 48.0 4.32e-01 77.6% 98.0%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 45.0 2.99e-01 73.7% 90.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 45.0 3.72e-01 76.3% 93.3%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 41.0 4.52e-01 82.9% 85.2%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 45.0 3.78e-01 76.3% 96.1%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.62 43.0 3.24e-01 72.4% 66.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 45.0 2.93e-01 77.6% 74.3%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.61 48.0 3.07e-01 84.2% 96.3%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.60 51.0 4.32e-01 93.4% 81.6%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.60 47.0 3.00e-01 82.9% 96.4%
3afcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 46.0 2.84e-01 84.2% 95.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 43.0 3.56e-01 77.6% 83.6%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 44.0 3.67e-01 78.9% 98.5%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.59 44.0 2.74e-01 81.6% 36.0%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 45.0 3.01e-01 84.2% 88.8%
2qpzA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 42.0 3.83e-01 77.6% 95.1%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.58 42.0 3.84e-01 77.6% 94.2%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.58 42.0 3.66e-01 77.6% 55.0%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 43.0 3.55e-01 80.3% 87.3%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 40.0 3.32e-01 75.0% 90.8%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.53e-01 82.9% 87.7%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.55 42.0 2.78e-01 82.9% 25.5%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.55 42.0 2.91e-01 88.2% 56.7%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.54 41.0 3.55e-01 80.3% 59.2%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.54 37.0 3.67e-01 72.4% 70.2%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.54 43.0 2.96e-01 86.8% 95.6%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 41.0 2.92e-01 90.8% 92.8%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 41.0 3.80e-01 85.5% 94.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.29e-01 82.9% 94.0%
3nvqA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 37.0 2.34e-01 80.3% 55.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1095153 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 49.0 3.09e-01 77.6% 76.8%
5012828 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.66 47.0 2.99e-01 75.0% 82.9%
3782836 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 48.0 3.02e-01 77.6% 77.9%
4955652 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 45.0 2.89e-01 72.4% 29.0%
4568248 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.64 44.0 2.66e-01 71.1% 90.7%
4631877 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.63 46.0 2.81e-01 77.6% 76.8%
3335330 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 44.0 2.75e-01 72.4% 29.9%
3361286 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 44.0 2.76e-01 72.4% 32.4%
4000029 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.63 43.0 2.85e-01 72.4% 28.9%
4314668 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.62 42.0 2.84e-01 71.1% 24.8%
4955776 881.2.1.0 ↗ a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.62 42.0 3.42e-01 71.1% 45.9%
3273594 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 45.0 2.83e-01 76.3% 33.7%
3405401 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.61 47.0 2.88e-01 81.6% 97.5%
5057301 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 44.0 3.09e-01 76.3% 61.5%
3259927 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 45.0 3.03e-01 80.3% 94.2%
4881743 5.1.2.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DPPIV_N 0.60 46.0 2.79e-01 81.6% 96.4%
1063623 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 43.0 3.53e-01 76.3% 93.5%
3645923 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 43.0 2.74e-01 76.3% 32.1%
3609816 66.1.1.3 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Sol_Rieske_ferrdox 0.59 46.0 3.73e-01 84.2% 93.1%
4407231 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.59 43.0 2.69e-01 77.6% 37.1%
3402780 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 48.0 3.04e-01 90.8% 84.4%
3659251 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 43.0 2.92e-01 78.9% 42.2%
3809547 5.1.4.297 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 0.58 45.0 2.92e-01 84.2% 90.7%
3645846 5.1.4.383 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VPS11_N 0.57 45.0 2.94e-01 86.8% 90.1%
3591503 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.22e-01 73.7% 58.6%
5014493 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.57 48.0 3.44e-01 94.7% 80.9%
3412604 5.1.4.224 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_RFWD3 0.57 41.0 2.70e-01 77.6% 63.8%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.57 42.0 4.04e-01 77.6% 96.5%
3672152 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.56 44.0 2.85e-01 84.2% 98.3%
3830081 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.56 40.0 2.66e-01 76.3% 66.8%
4950432 210.1.1.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › DUF2121 0.56 44.0 3.28e-01 84.2% 62.6%
3962450 9.27.1.0 ↗ beta barrels › Lipocalins/Streptavidin › LpqH › LpqH 0.56 39.0 3.54e-01 73.7% 82.9%
3631256 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.56 41.0 2.68e-01 80.3% 63.7%
5062107 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 44.0 2.99e-01 86.8% 97.7%
3392483 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.55 45.0 2.74e-01 88.2% 19.6%
1400361 5.1.3.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF5128 0.55 43.0 2.84e-01 86.8% 90.4%
3391302 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.93e-01 86.8% 98.3%
5792 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.54 41.0 3.54e-01 80.3% 58.7%
3474457 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 40.0 3.77e-01 78.9% 74.7%
4989818 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 41.0 2.99e-01 81.6% 85.0%
3748485 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.54 44.0 3.31e-01 90.8% 61.5%
5036807 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.54 39.0 3.69e-01 77.6% 91.6%
3567966 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 38.0 3.53e-01 75.0% 93.7%
4614038 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 38.0 3.27e-01 78.9% 88.0%
5014198 5.1.4.670 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29948 0.52 42.0 2.76e-01 90.8% 94.8%
140627 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.50 37.0 2.34e-01 80.3% 55.8%