←Back to structures

AP018399.1BBA65689.1X__00541

Bact-Vir

AP018399.1__BBA65689.1__X__00541

Identity

Accession:: AP018399 ↗
Kingdom:: phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-158

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1yfmA01	1.10.275.10	Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain)	0.59	30.0	3.24e-01	85.7%	55.6%
1rj1A00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.56	34.0	3.50e-01	85.1%	61.5%
3geeA02	1.20.120.430	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2	0.54	30.0	2.98e-01	70.8%	48.8%
1xg2B00	1.20.140.40	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein	0.54	33.0	3.41e-01	85.1%	62.3%
4nphA02	1.20.1270.330	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.52	25.0	3.37e-01	85.1%	90.5%
1exzB00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.50	28.0	3.01e-01	85.7%	60.7%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3467780	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.58	33.0	3.42e-01	70.1%	57.3%
1316591	160.1.1.3 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C	0.54	27.0	3.53e-01	85.1%	88.6%
3952549	191.1.1.41 ↗	alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › EthR_C	0.53	29.0	3.20e-01	84.4%	64.8%
4183860	160.1.1.3 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C	0.53	26.0	3.41e-01	87.0%	87.5%
3387361	160.1.1.3 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › T3SS_ATPase_C	0.52	26.0	3.35e-01	83.8%	89.3%
4943368	160.1.1.0 ↗	alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase	0.52	32.0	3.73e-01	100.0%	88.6%

D2 high residues 167-337

PDB

Domain cluster: rep: S2_012_000_R2_scaffold_0_prodigal-single.1__X__X__00120__D203-379

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1tdqA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.55	30.0	3.84e-01	100.0%	96.7%
1pcfA00	2.30.31.10	Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A	0.53	19.0	2.84e-01	74.3%	74.2%
1tdqA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.53	29.0	3.61e-01	100.0%	90.4%
3vtiA01	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	29.0	3.75e-01	87.1%	96.9%
2e29A01	3.30.70.2280	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	25.0	3.41e-01	78.4%	100.0%
1urrA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	29.0	3.68e-01	87.1%	99.0%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1150075	304.110.1.1 ↗	a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase	0.52	29.0	3.68e-01	90.1%	92.2%
3606397	3529.1.1.1 ↗	beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault	0.51	22.0	3.11e-01	94.7%	90.0%

D3 high residues 352-467

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
6vxcA01	3.20.70.20	Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain ›	0.52	46.0	2.82e-01	100.0%	52.0%
1ei5A01	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.51	38.0	2.88e-01	79.3%	78.5%
4q7qB00	3.40.50.1110	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase	0.50	42.0	3.37e-01	94.8%	87.2%

D4 high residues 482-551

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ztaA00	1.10.490.130	Mainly Alpha › Orthogonal Bundle › Globin-like ›	0.64	58.0	4.57e-01	100.0%	79.1%
1ie9A00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.64	43.0	2.95e-01	97.1%	19.2%
1q90B00	1.20.810.10	Mainly Alpha › Up-down Bundle › Cytochrome Bc1 Complex; Chain C › Cytochrome Bc1 Complex; Chain C	0.55	48.0	3.42e-01	97.1%	34.9%
1qvrC04	6.10.140.130	Special › Helix non-globular › Helix Hairpins ›	0.51	45.0	3.78e-01	95.7%	71.7%
1hjrA00	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.51	37.0	2.95e-01	80.0%	83.5%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4027885	3291.1.1.220 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Stevor	0.69	56.0	4.40e-01	95.7%	44.2%
4026839	130.1.2.1 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD	0.68	46.0	3.39e-01	90.0%	26.5%
3960055	592.1.1.14 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain › Transposase_mut	0.65	38.0	3.02e-01	82.9%	31.5%
5051575	2004.5.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain	0.64	55.0	3.98e-01	91.4%	77.8%
3933696	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.63	36.0	3.63e-01	71.4%	55.7%
3593415	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.61	43.0	4.09e-01	72.9%	98.8%
3401664	109.4.1.1419 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27567	0.60	44.0	3.02e-01	77.1%	77.0%
3896554	101.1.1.132 ↗	alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N	0.57	31.0	3.12e-01	80.0%	52.9%
3865185	611.3.1.1 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26	0.54	40.0	3.59e-01	77.1%	70.5%
4932829	4016.1.1.1 ↗	alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV	0.54	46.0	3.67e-01	95.7%	53.8%
3511283	304.55.1.8 ↗	a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › TrwC	0.52	44.0	2.96e-01	100.0%	97.4%