←Back to structures

AP018399.1__BBA65731.1__X__00583

Bact-Vir

AP018399.1__BBA65731.1__X__00583

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-52
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4z9nA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.78 64.0 4.97e-01 91.5% 93.2%
2vhaA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.76 62.0 4.88e-01 91.5% 97.9%
2e45A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.71 37.0 4.22e-01 100.0% 91.3%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.67 57.0 4.54e-01 100.0% 83.0%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.65 54.0 4.63e-01 100.0% 87.8%
3d4iB01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.62 44.0 2.83e-01 76.6% 27.0%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 51.0 4.19e-01 100.0% 58.5%
3b4vD01 3.90.290.10 Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain 0.61 50.0 4.52e-01 100.0% 82.9%
3hh2D01 3.90.290.10 Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain 0.59 48.0 4.02e-01 100.0% 64.5%
2it1A02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 40.0 3.72e-01 78.7% 92.1%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 38.0 3.67e-01 78.7% 98.3%
4hoiB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.28e-01 91.5% 90.4%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.51 39.0 3.87e-01 100.0% 84.6%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3562527 386.1.1.358 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zf-C2H2_ZNF451 0.64 55.0 5.15e-01 100.0% 76.7%
None — 0.64 55.0 5.15e-01 100.0% 76.7%
3914802 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 49.0 4.52e-01 100.0% 67.7%
3563948 221.1.1.6 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.59 47.0 3.77e-01 95.7% 61.0%
2530280 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.58 45.0 4.24e-01 89.4% 98.4%
3291392 205.1.1.19 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_13 0.56 46.0 4.19e-01 100.0% 95.7%
3404745 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.53 38.0 3.30e-01 89.4% 98.9%
3614323 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 38.0 2.25e-01 80.9% 77.4%
3211574 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.51 40.0 3.15e-01 95.7% 95.0%
4416098 387.1.5.3 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Toxin_3 0.50 43.0 3.95e-01 95.7% 75.0%