←Back to structures

AP018399.1__BBA65732.1__X__00584

Bact-Vir

AP018399.1__BBA65732.1__X__00584

Identity

Accession:
AP018399 ↗
Kingdom:
phage

Quality

70.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_XacN1

TaxID: 2042251

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 50-111
PDB
Domain cluster: rep: S2_009_000_R2_scaffold_26_prodigal-single.1__X__X__00130__D40-93
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 3.99e-01 83.9% 54.7%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.61 40.0 4.01e-01 90.3% 65.1%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 43.0 4.70e-01 80.6% 94.0%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 44.0 3.71e-01 82.3% 49.1%
5lvxC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 42.0 3.60e-01 80.6% 97.2%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 42.0 3.02e-01 80.6% 74.4%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 39.0 4.24e-01 82.3% 95.9%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.56 41.0 3.82e-01 79.0% 73.4%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 43.0 3.31e-01 85.5% 42.0%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.55 39.0 3.23e-01 75.8% 96.6%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.55 42.0 3.15e-01 83.9% 46.8%
2jwpA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.54 42.0 3.11e-01 87.1% 55.2%
3shsA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 3.36e-01 85.5% 56.1%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 3.85e-01 85.5% 69.9%
3wnkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 37.0 3.01e-01 75.8% 36.8%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.58e-01 91.9% 56.2%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.58e-01 85.5% 67.0%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.35e-01 85.5% 52.6%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 39.0 4.11e-01 82.3% 96.4%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 40.0 3.83e-01 83.9% 80.6%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 38.0 3.93e-01 77.4% 100.0%
3ujzA03 2.60.20.40 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › 0.52 34.0 2.94e-01 80.6% 42.0%
1xzwA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.52 39.0 3.42e-01 83.9% 55.1%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.52 38.0 2.64e-01 83.9% 21.3%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 42.0 2.98e-01 91.9% 82.4%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.37e-01 85.5% 61.0%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.62e-01 80.6% 87.8%
5f1sA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.15e-01 77.4% 57.8%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 39.0 3.94e-01 85.5% 89.1%
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.50 41.0 3.76e-01 100.0% 67.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4970537 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 43.0 5.09e-01 80.6% 90.0%
3714896 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.70 41.0 4.73e-01 80.6% 82.2%
3489248 375.1.1.45 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 0.62 39.0 4.43e-01 90.3% 95.0%
3480424 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 38.0 4.27e-01 91.9% 92.5%
5022651 375.11.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain in CopZ › Zinc-binding domain in CopZ 0.60 36.0 3.46e-01 77.4% 52.9%
4607892 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 34.0 4.00e-01 77.4% 90.0%
4995694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.55e-01 87.1% 100.0%
5026915 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 40.0 4.40e-01 80.6% 94.0%
3187671 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 43.0 4.38e-01 82.3% 88.3%
3928714 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 3.53e-01 83.9% 50.5%
2773985 219.1.1.43 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CoV_peptidase 0.56 42.0 2.84e-01 82.3% 20.6%
3244077 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.56 43.0 4.36e-01 82.3% 88.3%
3596753 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.38e-01 82.3% 98.0%
3579545 11.1.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Zona_pellucida 0.55 41.0 3.14e-01 80.6% 44.8%
3169767 1.1.7.49 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ski7_2nd 0.55 44.0 3.47e-01 90.3% 55.0%
3489254 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 42.0 3.07e-01 85.5% 51.9%
3494162 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.46e-01 83.9% 63.5%
4930203 375.1.1.58 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.55 40.0 4.19e-01 80.6% 89.1%
4948014 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 39.0 4.26e-01 79.0% 96.0%
3898644 355.1.1.2 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PSI 0.54 40.0 3.81e-01 83.9% 81.2%
3236970 11.1.1.842 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_C 0.53 40.0 2.95e-01 83.9% 49.7%
5030093 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.53 39.0 3.78e-01 85.5% 68.0%
5035944 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 4.03e-01 80.6% 90.0%
4059006 9.9.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.53 39.0 3.17e-01 80.6% 98.4%
3447144 11.1.1.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.53 38.0 3.35e-01 85.5% 50.5%
4966519 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.53 38.0 3.94e-01 77.4% 91.7%
3494540 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.53 40.0 3.14e-01 85.5% 46.2%
3899215 11.1.1.850 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28354 0.53 40.0 3.40e-01 85.5% 49.1%
540 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.52 37.0 4.06e-01 80.6% 100.0%
3910912 11.1.1.3 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 40.0 3.39e-01 85.5% 48.2%
1281652 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 39.0 4.11e-01 82.3% 96.4%
32412 11.1.1.214 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.52 39.0 3.29e-01 83.9% 47.8%
3989353 9.9.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.52 39.0 3.14e-01 80.6% 98.4%
5055297 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.58e-01 83.9% 61.2%
4818740 11.1.1.12 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin 0.51 36.0 3.52e-01 85.5% 68.1%
3471059 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.51 39.0 2.66e-01 88.7% 61.1%
4461109 11.1.1.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N 0.51 37.0 3.31e-01 79.0% 57.8%
4624262 11.1.1.271 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_6 0.51 38.0 3.12e-01 85.5% 40.8%
4056826 3816.1.1.1 ↗ beta barrels › Polymyxin B resistance protein › Polymyxin B resistance protein › Polymyxin B resistance protein › PmrD 0.51 43.0 4.04e-01 100.0% 95.0%
3997517 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.50 34.0 3.33e-01 83.9% 64.3%