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AP018486.1__BBC53802.1__X__00008

Bact-Vir

AP018486.1__BBC53802.1__X__00008

Identity

Accession:
AP018486 ↗
Kingdom:
phage

Quality

93.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sagamiharavirus› Mycobacterium_phage_PP

TaxID: 2077134

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-68
PDB
Domain cluster: rep: NC_023498.1__YP_009002747.1__CC50_gp014__00096__D26-89
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 62.0 6.74e-01 92.5% 98.2%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 59.0 6.23e-01 94.0% 93.3%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 60.0 6.27e-01 94.0% 91.9%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 58.0 5.86e-01 88.1% 97.1%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 50.0 3.92e-01 86.6% 35.7%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.69 61.0 5.40e-01 95.5% 71.6%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 57.0 5.50e-01 88.1% 86.5%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 60.0 4.59e-01 97.0% 56.3%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 55.0 5.34e-01 88.1% 81.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 60.0 5.63e-01 100.0% 82.5%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.66 57.0 4.56e-01 95.5% 58.3%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.65 54.0 5.64e-01 89.6% 96.8%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 5.19e-01 88.1% 97.0%
2lkoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 45.0 3.64e-01 77.6% 73.9%
3hl8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.62 53.0 4.27e-01 97.0% 67.9%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 51.0 4.23e-01 92.5% 72.7%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 46.0 4.74e-01 82.1% 96.8%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 51.0 4.03e-01 94.0% 73.8%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 3.93e-01 95.5% 71.0%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 47.0 3.76e-01 97.0% 68.5%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.56 44.0 4.01e-01 86.6% 81.7%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.56 39.0 3.83e-01 74.6% 68.9%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.58e-01 95.5% 73.2%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 4.21e-01 97.0% 82.8%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.56 42.0 3.78e-01 91.0% 56.4%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 46.0 3.60e-01 95.5% 70.7%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 46.0 3.55e-01 97.0% 69.2%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.61e-01 91.0% 61.2%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 4.22e-01 77.6% 85.2%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.55 40.0 3.86e-01 82.1% 68.4%
4wsqB00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 42.0 2.75e-01 85.1% 29.4%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.54 40.0 3.41e-01 80.6% 80.0%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.54 42.0 3.54e-01 89.6% 70.2%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 42.0 3.55e-01 89.6% 53.7%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.45e-01 94.0% 85.2%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 42.0 3.32e-01 94.0% 77.7%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.53 42.0 3.38e-01 91.0% 79.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.53 41.0 3.65e-01 89.6% 79.8%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 39.0 3.94e-01 83.6% 90.9%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 39.0 2.35e-01 83.6% 12.9%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.25e-01 88.1% 90.8%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 45.0 3.55e-01 97.0% 87.1%
3mqzA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.51 42.0 3.01e-01 92.5% 40.0%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 44.0 3.63e-01 100.0% 80.6%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 41.0 3.69e-01 97.0% 84.0%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.51 35.0 3.65e-01 83.6% 80.0%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.13e-01 76.1% 77.1%
4hesA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 40.0 2.72e-01 89.6% 53.1%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.50 40.0 3.55e-01 92.5% 90.6%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3296864 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.89 66.0 6.98e-01 94.0% 86.7%
4059465 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.82 67.0 6.68e-01 95.5% 85.3%
5036498 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.80 65.0 6.29e-01 95.5% 77.3%
4932609 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 64.0 6.56e-01 94.0% 87.7%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.79 62.0 6.76e-01 91.0% 100.0%
5042892 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.79 63.0 6.68e-01 94.0% 95.0%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 63.0 6.66e-01 94.0% 96.7%
151542 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 60.0 6.06e-01 92.5% 83.3%
3440094 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.78 65.0 6.85e-01 97.0% 100.0%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 63.0 6.64e-01 95.5% 98.3%
3885050 4.1.1.360 ↗ beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 0.75 61.0 4.35e-01 91.0% 32.6%
3774821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 62.0 6.51e-01 92.5% 96.7%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 63.0 6.44e-01 94.0% 92.3%
2807756 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 6.16e-01 94.0% 98.2%
3348456 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.74 61.0 6.49e-01 92.5% 98.3%
3820066 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 61.0 6.40e-01 91.0% 96.7%
3222147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 59.0 6.27e-01 92.5% 96.7%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.73 59.0 5.40e-01 92.5% 68.2%
3549474 4.1.1.406 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-A_UBE2O 0.72 65.0 4.77e-01 98.5% 97.0%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 60.0 5.74e-01 88.1% 86.7%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 6.39e-01 92.5% 98.4%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.71 61.0 5.84e-01 91.0% 96.0%
157323 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.86e-01 88.1% 97.1%
3467678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 66.0 5.47e-01 100.0% 67.3%
3171604 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 58.0 5.62e-01 88.1% 92.0%
3819340 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.71 64.0 5.25e-01 100.0% 90.0%
3926179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 6.18e-01 92.5% 96.9%
3888349 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.71 57.0 4.47e-01 92.5% 43.8%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.71 64.0 5.32e-01 100.0% 93.9%
3349135 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.57e-01 95.5% 87.8%
3911348 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 57.0 4.46e-01 92.5% 43.8%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 4.75e-01 95.5% 50.0%
3898370 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 55.0 5.90e-01 83.6% 100.0%
3684646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.82e-01 95.5% 82.5%
3512419 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 57.0 5.24e-01 88.1% 76.5%
3226827 4.1.1.133 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.69 59.0 5.00e-01 97.0% 58.1%
3879653 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.69 58.0 5.71e-01 92.5% 85.7%
3526953 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 57.0 5.93e-01 89.6% 98.4%
3912726 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 54.0 5.34e-01 83.6% 87.1%
4028731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 61.0 6.27e-01 95.5% 100.0%
3847592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 58.0 3.44e-01 91.0% 20.2%
3176702 219.1.1.115 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.68 60.0 4.64e-01 100.0% 67.1%
3891252 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.78e-01 86.6% 100.0%
3392130 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.68 57.0 5.79e-01 94.0% 93.8%
3599298 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.68 58.0 3.69e-01 94.0% 31.1%
3743973 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 54.0 5.07e-01 88.1% 77.5%
4141828 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 58.0 5.67e-01 100.0% 94.6%
4168737 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.62e-01 100.0% 94.6%
3214474 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.66 59.0 5.16e-01 100.0% 73.0%
3191059 705.1.1.0 ↗ beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N 0.65 51.0 4.30e-01 88.1% 85.8%
3879755 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.65 57.0 4.90e-01 97.0% 74.3%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 59.0 4.87e-01 100.0% 60.9%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.14e-01 94.0% 81.3%
3605922 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.89e-01 95.5% 86.0%
3023952 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.68e-01 95.5% 80.5%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 58.0 5.11e-01 100.0% 69.5%
3277206 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 57.0 5.41e-01 97.0% 85.9%
3965064 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.64 56.0 4.57e-01 98.5% 82.4%
3653322 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.63 56.0 3.92e-01 100.0% 87.7%
5032977 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.11e-01 97.0% 86.3%
3941573 4.1.1.413 ↗ beta barrels › SH3 › SH3 › SH3 › Exonuc_X-T_C 0.62 54.0 4.22e-01 95.5% 68.6%
3246847 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.61 51.0 3.66e-01 92.5% 85.1%
4044377 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 3.22e-01 100.0% 34.3%
3558063 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 47.0 3.60e-01 95.5% 68.0%
4139943 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 47.0 3.69e-01 95.5% 74.8%
3894256 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 47.0 3.64e-01 95.5% 69.1%
3620841 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 43.0 3.78e-01 89.6% 76.5%
3964608 220.1.1.104 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cpta_toxin 0.56 40.0 4.04e-01 79.1% 98.6%
4085391 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.55 45.0 3.40e-01 95.5% 65.0%
3496857 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.54e-01 86.6% 82.9%
4509116 209.1.1.1 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.51 45.0 3.86e-01 100.0% 76.1%
3625965 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.51 39.0 3.48e-01 83.6% 61.1%
4028916 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.50 40.0 3.48e-01 91.0% 89.1%