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AP018486.1__BBC53843.1__X__00049

Bact-Vir

AP018486.1__BBC53843.1__X__00049

Identity

Accession:
AP018486 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.80 54.0 4.34e-01 88.2% 38.4%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.73 52.0 4.75e-01 88.2% 56.5%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 59.0 4.18e-01 88.2% 46.2%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 53.0 4.13e-01 77.9% 93.8%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.71 58.0 4.91e-01 88.2% 63.3%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 57.0 4.42e-01 88.2% 53.7%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.71 54.0 4.80e-01 92.6% 57.9%
7cayA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.70 56.0 4.98e-01 88.2% 61.0%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.70 54.0 4.23e-01 83.8% 89.0%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.69 55.0 4.72e-01 88.2% 62.8%
3u0jA00 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.68 54.0 3.75e-01 86.8% 44.0%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.68 53.0 4.11e-01 85.3% 85.4%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.68 42.0 4.07e-01 83.8% 54.4%
6vbkA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.66 53.0 4.55e-01 88.2% 63.1%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 52.0 4.06e-01 88.2% 86.0%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.35e-01 79.4% 62.5%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 52.0 4.09e-01 88.2% 60.4%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 49.0 3.85e-01 82.4% 80.8%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 50.0 3.48e-01 85.3% 53.8%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.55e-01 77.9% 77.4%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 57.0 4.58e-01 100.0% 60.9%
4exoA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 54.0 4.20e-01 92.6% 59.6%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 41.0 4.35e-01 70.6% 75.9%
4gj4D00 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.64 52.0 4.43e-01 92.6% 84.6%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.63 50.0 4.16e-01 88.2% 49.2%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.62 48.0 4.00e-01 86.8% 84.8%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 42.0 3.65e-01 89.7% 46.2%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 49.0 4.27e-01 89.7% 62.6%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.60 47.0 3.60e-01 86.8% 66.5%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 52.0 4.28e-01 100.0% 59.8%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 52.0 4.20e-01 100.0% 60.3%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 40.0 3.80e-01 89.7% 60.2%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 38.0 3.58e-01 88.2% 56.8%
4lrzE02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 46.0 4.19e-01 91.2% 95.7%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 42.0 3.14e-01 83.8% 40.9%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 36.0 3.17e-01 72.1% 43.4%
1jeyA02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.55 44.0 3.71e-01 92.6% 58.7%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 41.0 3.31e-01 83.8% 39.4%
1vwxY00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.33e-01 80.9% 50.0%
2zbbA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 42.0 4.06e-01 88.2% 95.1%
1dgsA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.64e-01 70.6% 65.8%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 37.0 3.08e-01 73.5% 76.1%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 47.0 3.72e-01 100.0% 58.9%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 37.0 3.26e-01 88.2% 45.5%
1o6eA00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.53 44.0 3.18e-01 97.1% 78.7%
2rk9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 35.0 3.04e-01 91.2% 41.0%
2i82B00 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.52 44.0 3.20e-01 100.0% 52.8%
2kqfA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 42.0 3.80e-01 92.6% 93.8%
2pmlX01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.29e-01 85.3% 53.2%
1bf5A04 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.58e-01 94.1% 69.9%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4081025 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.75 66.0 4.30e-01 94.1% 52.5%
4245054 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.75 65.0 4.38e-01 94.1% 55.4%
3972102 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.75 56.0 4.89e-01 92.6% 54.0%
3965594 1.1.13.53 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_3 0.74 54.0 4.81e-01 88.2% 54.7%
3497989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.36e-01 79.4% 80.0%
3501754 1.1.13.19 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Caud_tail_N 0.74 53.0 4.61e-01 88.2% 49.5%
4983682 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.74 60.0 4.71e-01 88.2% 65.0%
3720023 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 56.0 4.90e-01 92.6% 55.0%
4020093 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 56.0 4.44e-01 85.3% 97.0%
3267872 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 54.0 4.32e-01 88.2% 43.1%
3798312 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 48.0 4.82e-01 79.4% 70.0%
5012011 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 58.0 4.74e-01 92.6% 54.4%
3606476 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.69 51.0 5.48e-01 89.7% 100.0%
4312484 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.69 57.0 4.99e-01 92.6% 73.3%
3256432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 44.0 4.65e-01 73.5% 75.0%
3180942 2.1.1.194 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Mit_ribos_Mrp51 0.68 53.0 4.09e-01 83.8% 91.3%
3980899 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 57.0 4.84e-01 92.6% 66.4%
5037173 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 52.0 4.63e-01 94.1% 58.9%
4027502 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.52e-01 73.5% 70.8%
3626966 1.1.7.90 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ZNFX1 0.67 53.0 4.55e-01 89.7% 53.6%
3935716 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 45.0 4.42e-01 79.4% 64.0%
3629455 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.67 55.0 4.03e-01 92.6% 92.1%
3176265 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.67 45.0 3.49e-01 83.8% 31.0%
5051220 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 49.0 4.46e-01 89.7% 58.9%
3549321 4.11.1.5 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.66 45.0 3.48e-01 85.3% 30.0%
5010878 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 55.0 4.64e-01 92.6% 54.8%
None 0.66 51.0 3.79e-01 83.8% 82.9%
3670066 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.65 53.0 4.04e-01 88.2% 74.2%
3992087 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.65 51.0 3.82e-01 85.3% 74.1%
3621303 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.30e-01 89.7% 69.2%
3575867 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.65 54.0 4.26e-01 91.2% 89.1%
2665335 1.1.9.5 beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg 0.65 57.0 4.47e-01 100.0% 72.3%
3242335 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.65 53.0 3.83e-01 91.2% 64.1%
3510024 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.65 49.0 4.21e-01 82.4% 70.0%
3550047 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.64 51.0 3.81e-01 86.8% 80.0%
3870945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 51.0 3.64e-01 86.8% 68.0%
3210653 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.83e-01 77.9% 81.5%
4642857 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 50.0 4.77e-01 85.3% 76.2%
3474784 4.1.1.20 beta barrels › SH3 › SH3 › SH3 › BAH 0.64 53.0 3.94e-01 91.2% 82.3%
3948266 223.1.1.67 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7 0.63 55.0 4.08e-01 100.0% 51.9%
3627036 223.1.1.98 a+b three layers › Profilin-like › sensor domains › sensor domains › PF30670 0.63 51.0 4.57e-01 91.2% 92.0%
3967111 3338.2.1.2 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › BamI_lipocalin 0.63 43.0 3.58e-01 82.4% 39.2%
3985160 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 51.0 4.36e-01 94.1% 85.2%
3611425 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.54e-01 86.8% 68.2%
4598574 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 52.0 3.84e-01 100.0% 55.4%
3617446 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.59 42.0 3.70e-01 86.8% 49.5%
3859218 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.59 48.0 3.97e-01 88.2% 50.8%
3607438 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.58 45.0 3.32e-01 83.8% 59.4%
3954468 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 49.0 3.67e-01 100.0% 44.7%
3590379 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.58 46.0 4.27e-01 89.7% 68.9%
3485761 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 44.0 3.26e-01 82.4% 41.1%
3491140 221.1.2.16 a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › MTRES1_C 0.54 44.0 3.79e-01 88.2% 84.8%
5021851 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.54 47.0 3.04e-01 100.0% 20.9%
3969782 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 45.0 3.44e-01 100.0% 42.8%
5048403 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.54 46.0 4.11e-01 98.5% 96.0%
5044940 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 42.0 3.72e-01 92.6% 90.0%
3697893 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.52 37.0 2.21e-01 76.5% 14.5%
3876143 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 40.0 3.31e-01 91.2% 56.3%