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AP018487.1__BBC53940.1__X__00066

Bact-Vir

AP018487.1__BBC53940.1__X__00066

Identity

Accession:
AP018487 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-72
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.71 37.0 4.72e-01 87.5% 94.1%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.63 39.0 3.98e-01 87.5% 64.5%
5flxf00 6.20.50.150 Special › Other non-globular › N-terminal domain of TfIIb › 0.63 36.0 3.46e-01 85.9% 47.9%
2nutA02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.62 40.0 4.14e-01 87.5% 68.9%
4zdtC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 47.0 4.58e-01 96.9% 78.6%
4zohA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.59 40.0 3.15e-01 100.0% 31.5%
1vwxp00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.56 38.0 3.44e-01 98.4% 49.5%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 43.0 3.37e-01 98.4% 97.1%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.53 34.0 3.44e-01 85.9% 64.5%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 35.0 2.41e-01 70.3% 92.4%
1ej6A04 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 35.0 2.45e-01 71.9% 53.9%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.50 35.0 3.42e-01 84.4% 65.3%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.86 47.0 6.10e-01 90.6% 100.0%
3786601 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.85 46.0 5.91e-01 85.9% 97.1%
3678606 375.1.1.212 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_FGT1_2 0.84 46.0 5.96e-01 89.1% 100.0%
4995783 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 50.0 6.03e-01 93.8% 95.0%
3262965 376.1.4.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog 0.83 48.0 4.83e-01 89.1% 57.8%
5031811 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 52.0 6.08e-01 96.9% 95.6%
3514931 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 43.0 5.36e-01 89.1% 90.0%
3825063 1067.1.1.0 few secondary structure elements › pheromone Ep-1 › pheromone Ep-1 › pheromone Ep-1 0.74 42.0 5.09e-01 87.5% 100.0%
4933539 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.74 48.0 3.29e-01 96.9% 20.0%
3564885 375.1.1.44 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.74 37.0 4.76e-01 78.1% 100.0%
4122844 375.1.1.213 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.73 41.0 5.01e-01 93.8% 90.0%
4972401 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.73 49.0 3.36e-01 96.9% 20.9%
3603682 2484.1.1.211 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB 0.72 48.0 3.26e-01 96.9% 19.6%
5013223 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.72 46.0 3.22e-01 96.9% 20.5%
5011867 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.71 47.0 3.43e-01 96.9% 26.2%
5017725 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.70 47.0 3.35e-01 96.9% 23.1%
4999482 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.70 47.0 3.27e-01 96.9% 21.4%
5025801 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.70 44.0 3.17e-01 98.4% 22.2%
5018525 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 40.0 4.81e-01 93.8% 92.5%
5055298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 35.0 3.66e-01 81.2% 51.7%
4979039 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.68 46.0 3.21e-01 96.9% 21.5%
4282792 375.1.1.44 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.68 36.0 4.54e-01 81.2% 91.4%
5072432 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.68 46.0 3.28e-01 96.9% 24.3%
5005258 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.68 46.0 3.19e-01 96.9% 22.0%
4336252 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 50.0 4.21e-01 96.9% 47.6%
4943069 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 45.0 3.48e-01 96.9% 31.4%
5004517 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.67 46.0 3.15e-01 96.9% 21.4%
4929702 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 44.0 4.77e-01 100.0% 88.0%
4989659 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.65 41.0 3.29e-01 98.4% 31.5%
3937568 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.64 54.0 4.93e-01 96.9% 69.4%
4929246 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 39.0 4.58e-01 96.9% 100.0%
4439164 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 46.0 3.05e-01 98.4% 19.6%
3168651 375.1.1.19 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.62 40.0 4.38e-01 93.8% 84.0%
5056342 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 35.0 2.58e-01 90.6% 21.3%
4398485 821.1.1.1 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.62 50.0 3.33e-01 95.3% 23.0%
3846254 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.61 51.0 4.48e-01 98.4% 63.3%
4503505 376.1.1.37 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C 0.60 53.0 4.23e-01 96.9% 60.8%
4991162 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.60 41.0 2.85e-01 96.9% 21.4%
5046730 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.59 46.0 3.63e-01 96.9% 40.0%
4026585 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 48.0 3.34e-01 93.8% 32.4%
4056467 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 41.0 4.21e-01 98.4% 81.7%
3980811 375.1.1.60 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.57 41.0 4.22e-01 98.4% 81.7%
5075524 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.55 49.0 3.45e-01 98.4% 42.6%
3400885 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.52 26.0 3.38e-01 96.9% 88.6%
D2 high residues 74-136
PDB
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 61.0 5.26e-01 98.4% 55.6%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 64.0 6.12e-01 96.8% 83.3%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 59.0 5.70e-01 98.4% 78.1%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 62.0 4.82e-01 98.4% 43.6%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 61.0 5.58e-01 100.0% 70.6%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 60.0 4.81e-01 96.8% 47.6%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 3.82e-01 82.5% 41.0%
2mh2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 47.0 4.73e-01 82.5% 79.7%
1z4hA01 1.10.238.160 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.64 49.0 5.05e-01 98.4% 94.8%
4y4mC00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 48.0 3.16e-01 100.0% 20.4%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.62 50.0 3.49e-01 93.7% 41.7%
3ez2A01 1.10.1660.30 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.62 51.0 5.03e-01 98.4% 88.6%
4rayA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.25e-01 82.5% 62.4%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.27e-01 93.7% 58.5%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.02e-01 87.3% 61.5%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.49e-01 98.4% 73.9%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 48.0 4.66e-01 96.8% 91.9%
3wp0A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 45.0 3.33e-01 87.3% 95.0%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.57 47.0 4.50e-01 95.2% 89.5%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.94e-01 84.1% 65.3%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.57 46.0 4.51e-01 90.5% 94.3%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.85e-01 77.8% 66.7%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.98e-01 82.5% 78.3%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 4.22e-01 96.8% 72.2%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 45.0 3.56e-01 93.7% 40.4%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 38.0 3.88e-01 82.5% 75.4%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 46.0 3.79e-01 98.4% 77.2%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.56e-01 100.0% 44.2%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.95e-01 87.3% 69.0%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.00e-01 100.0% 64.5%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.42e-01 92.1% 41.0%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.69e-01 100.0% 54.5%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 4.01e-01 98.4% 61.4%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.31e-01 98.4% 84.8%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.16e-01 98.4% 72.6%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.54 40.0 3.58e-01 82.5% 78.6%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.47e-01 100.0% 41.1%
2xfvA00 3.10.260.30 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › 0.54 45.0 3.85e-01 95.2% 64.8%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 4.05e-01 100.0% 69.9%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.75e-01 92.1% 58.4%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.23e-01 93.7% 35.9%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.69e-01 98.4% 55.8%
6qdjA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 46.0 4.35e-01 98.4% 98.7%
7xc2A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.83e-01 98.4% 69.8%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 3.67e-01 98.4% 53.6%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 4.08e-01 93.7% 79.2%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.46e-01 98.4% 44.8%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.37e-01 93.7% 42.1%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 44.0 3.74e-01 98.4% 57.8%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.96e-01 98.4% 72.4%
1b25A03 1.10.599.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 3 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 3 0.51 42.0 2.92e-01 93.7% 26.8%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.83e-01 98.4% 72.8%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.31e-01 100.0% 43.6%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.94e-01 100.0% 71.1%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.37e-01 100.0% 44.3%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.82e-01 98.4% 69.7%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.78e-01 100.0% 70.6%
1pzwA00 3.40.1800.20 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › 0.50 40.0 3.74e-01 98.4% 70.0%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4668445 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.82 66.0 6.98e-01 95.2% 100.0%
3604634 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.82 70.0 7.18e-01 96.8% 98.3%
3290892 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.81 66.0 5.54e-01 98.4% 53.3%
4032500 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 62.0 6.03e-01 96.8% 75.7%
4034168 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.80 62.0 6.57e-01 95.2% 96.4%
4929856 101.1.9.18 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.79 64.0 5.72e-01 98.4% 62.2%
3974607 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.79 62.0 4.95e-01 98.4% 42.3%
4334333 101.1.9.1 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind 0.79 64.0 4.89e-01 100.0% 40.0%
3289439 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.79 62.0 6.56e-01 96.8% 100.0%
5070666 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.78 62.0 6.50e-01 95.2% 98.2%
4933561 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 58.0 6.14e-01 90.5% 92.7%
5064906 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 59.0 6.26e-01 96.8% 98.2%
4034325 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 66.0 5.22e-01 98.4% 48.8%
4994568 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.76 60.0 6.29e-01 98.4% 100.0%
5047649 101.1.9.36 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.75 56.0 6.08e-01 88.9% 100.0%
3975516 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.75 62.0 5.21e-01 93.7% 54.3%
3280706 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 61.0 5.67e-01 95.2% 71.2%
3966930 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 64.0 5.29e-01 98.4% 54.5%
3954861 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 59.0 6.19e-01 96.8% 100.0%
3974460 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.74 62.0 4.90e-01 98.4% 45.4%
4672676 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 58.0 4.59e-01 98.4% 40.7%
3965196 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 62.0 6.36e-01 100.0% 98.3%
3949463 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 64.0 5.29e-01 100.0% 54.8%
3291502 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 61.0 6.29e-01 93.7% 100.0%
3291218 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 61.0 4.84e-01 98.4% 46.2%
4031948 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 59.0 4.92e-01 98.4% 52.2%
3278826 101.1.9.82 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 57.0 4.66e-01 93.7% 47.5%
4668593 103.4.1.23 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › DUF5375 0.70 57.0 5.03e-01 90.5% 88.4%
1068666 101.1.9.18 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_2 0.70 59.0 5.12e-01 100.0% 60.0%
2168161 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.70 54.0 5.57e-01 93.7% 93.0%
3387406 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.70 59.0 5.09e-01 100.0% 59.0%
None 0.69 59.0 5.74e-01 96.8% 85.7%
3958566 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.69 50.0 4.44e-01 77.8% 63.3%
4096952 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 59.0 4.87e-01 100.0% 53.9%
3941508 148.1.3.57 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF5375 0.68 55.0 4.86e-01 90.5% 88.4%
4564454 101.1.9.17 alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 57.0 4.91e-01 98.4% 58.1%
4954942 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 55.0 5.49e-01 98.4% 95.4%
5031078 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 49.0 4.31e-01 87.3% 63.0%
3688307 108.1.1.98 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.63 52.0 3.90e-01 100.0% 40.2%
5044560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 47.0 3.26e-01 82.5% 26.1%
4321081 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.62 52.0 3.75e-01 93.7% 95.0%
4927156 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 53.0 4.62e-01 100.0% 68.0%
5046626 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.60 51.0 3.90e-01 98.4% 52.9%
4223228 101.1.9.21 alpha arrays › HTH › HTH › Putative DNA-binding domain › Swi6_N 0.60 45.0 4.08e-01 84.1% 95.6%
4970959 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.71e-01 100.0% 84.3%
4955068 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 44.0 4.11e-01 100.0% 62.4%
4188749 101.1.2.20 alpha arrays › HTH › HTH › winged helix domain › Arg_repressor 0.59 46.0 4.32e-01 87.3% 75.0%
5030617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.20e-01 93.7% 62.0%
4055310 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.59 49.0 3.51e-01 93.7% 89.9%
4973217 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.43e-01 100.0% 71.8%
4032728 101.1.9.43 alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF771 0.58 47.0 4.69e-01 93.7% 100.0%
4967677 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.58 45.0 3.91e-01 87.3% 54.5%
3676148 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 48.0 3.98e-01 98.4% 58.4%
4354223 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.58 45.0 3.39e-01 92.1% 91.9%
3614506 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 47.0 4.34e-01 98.4% 75.6%
4510425 2004.1.1.50 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.57 45.0 3.33e-01 88.9% 92.2%
3829353 101.1.2.641 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.57 44.0 2.68e-01 98.4% 11.1%
4960070 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.15e-01 92.1% 68.9%
4947879 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 46.0 4.50e-01 92.1% 95.7%
3652603 101.1.2.516 alpha arrays › HTH › HTH › winged helix domain › PF25895 0.56 46.0 3.93e-01 98.4% 54.5%
5030237 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.43e-01 98.4% 81.2%
4316734 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 42.0 3.65e-01 82.5% 60.0%
4477375 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.56 46.0 3.37e-01 95.2% 88.4%
3811947 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.56 42.0 3.62e-01 100.0% 50.5%
4995404 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.16e-01 100.0% 72.5%
4956538 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.55 45.0 4.35e-01 100.0% 80.0%
5016433 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.19e-01 100.0% 76.0%
2511579 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 41.0 3.73e-01 88.9% 58.9%
4927050 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 37.0 3.43e-01 84.1% 52.9%
4984339 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.54 43.0 4.20e-01 98.4% 80.0%
5006267 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.54 44.0 4.06e-01 98.4% 67.8%
4015761 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 4.03e-01 100.0% 72.6%
3400082 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.53 45.0 3.96e-01 100.0% 66.0%
5050343 101.1.2.891 alpha arrays › HTH › HTH › winged helix domain › UBA_3 0.53 39.0 3.74e-01 82.5% 69.3%
4970461 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.53 42.0 4.09e-01 100.0% 77.3%
4949735 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.53 44.0 4.10e-01 100.0% 72.9%
3236695 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.46e-01 92.1% 72.0%
5073681 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 42.0 3.54e-01 100.0% 51.3%
4126575 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.52 42.0 3.36e-01 98.4% 42.1%
5050621 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.11e-01 100.0% 51.4%
5067582 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.51 35.0 2.98e-01 73.0% 83.1%
4953302 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 42.0 3.91e-01 100.0% 71.8%
4546696 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.51 42.0 3.88e-01 100.0% 72.2%
3725361 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.64e-01 92.1% 67.8%