Back to structures

AP018715.1__BBE37381.1__PHIM1EF22_1080__00108

Bact-Vir

AP018715.1__BBE37381.1__PHIM1EF22_1080__00108

Identity

Accession:
AP018715 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-125
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bmlC03 3.10.20.150 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 53.0 5.07e-01 87.3% 94.0%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 52.0 4.30e-01 87.3% 85.9%
1q33A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.65 50.0 3.83e-01 84.5% 63.7%
2pmvA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.64 51.0 4.45e-01 87.3% 96.3%
1zpsA01 3.10.20.810 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase 0.63 52.0 4.78e-01 91.5% 91.6%
2bw2A01 3.10.20.420 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain 0.62 43.0 4.69e-01 85.9% 94.5%
4hpqB00 2.60.270.60 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 0.62 49.0 4.18e-01 85.9% 68.7%
5c6dA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 48.0 4.24e-01 85.9% 80.4%
1hezE00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 47.0 5.09e-01 87.3% 98.4%
6scxC01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.59 51.0 3.86e-01 97.2% 44.2%
3u7zA00 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.59 47.0 4.25e-01 87.3% 94.8%
3fk9A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 44.0 3.56e-01 85.9% 55.6%
1v5oA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 46.0 4.12e-01 87.3% 75.5%
3gg6A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.58 47.0 3.83e-01 93.0% 59.7%
3lmmA03 3.30.565.60 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.57 43.0 3.32e-01 83.1% 50.9%
3i57A01 3.10.20.470 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.56 45.0 4.43e-01 85.9% 96.0%
1kf6B01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.56 44.0 3.97e-01 87.3% 91.3%
6lumB01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.56 45.0 3.93e-01 88.7% 89.1%
6hogA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 45.0 3.79e-01 88.7% 69.1%
2dbcA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 37.0 2.98e-01 100.0% 36.3%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 41.0 4.27e-01 87.3% 87.7%
1i42A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 42.0 3.98e-01 85.9% 85.4%
2bpsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 4.22e-01 88.7% 98.8%
1wjuA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 3.78e-01 87.3% 76.0%
3i57A02 2.60.40.4300 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.58e-01 85.9% 78.9%
2qgqA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.94e-01 100.0% 91.7%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 39.0 3.47e-01 84.5% 93.6%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.53e-01 100.0% 83.0%
2pw9C02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 39.0 4.20e-01 87.3% 100.0%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 39.0 3.43e-01 90.1% 73.2%
5ah5A01 3.10.20.590 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 40.0 4.23e-01 85.9% 98.4%
4je3B00 3.10.20.720 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 41.0 4.02e-01 90.1% 85.7%
3tmpA01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 34.0 2.76e-01 100.0% 33.3%
1n6zA00 3.10.20.250 Alpha Beta › Roll › Ubiquitin-like (UB roll) › YML108W-like 0.51 40.0 3.55e-01 87.3% 82.9%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 39.0 3.43e-01 88.7% 82.1%
2pptA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 33.0 2.88e-01 100.0% 44.3%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4273919 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 54.0 4.94e-01 87.3% 86.7%
3275396 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.65 53.0 4.78e-01 88.7% 90.5%
3893791 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 51.0 4.49e-01 85.9% 99.0%
3613343 221.1.1.46 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.63 51.0 4.42e-01 87.3% 77.3%
3563038 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 51.0 4.39e-01 87.3% 76.4%
3936154 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 53.0 4.82e-01 88.7% 91.1%
3411383 221.1.1.119 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP47_C 0.62 49.0 4.37e-01 87.3% 90.5%
3331410 304.12.1.7 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › DUF7811 0.62 51.0 4.53e-01 88.7% 67.0%
3612101 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 50.0 4.58e-01 88.7% 96.8%
3671897 221.1.1.111 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiq_DUF_assoc 0.62 50.0 4.76e-01 88.7% 91.8%
3924460 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 49.0 4.36e-01 85.9% 71.0%
4303049 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.61 51.0 4.06e-01 90.1% 57.9%
3702445 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 48.0 4.34e-01 87.3% 96.0%
3589296 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 48.0 3.54e-01 85.9% 54.6%
3610213 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 3.88e-01 87.3% 87.1%
2775407 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.60 52.0 4.37e-01 97.2% 70.2%
4343568 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.60 47.0 4.80e-01 87.3% 85.7%
3627108 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 4.29e-01 87.3% 95.0%
5075839 239.2.1.1 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like › PRA-CH 0.60 51.0 4.20e-01 95.8% 67.7%
3728630 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 4.09e-01 87.3% 70.4%
3706447 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 4.07e-01 88.7% 80.0%
3457365 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 48.0 4.14e-01 88.7% 82.7%
3700482 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 46.0 4.06e-01 87.3% 94.3%
4497524 221.1.1.24 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG5_UblB 0.58 47.0 4.02e-01 88.7% 97.4%
3931740 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 47.0 4.06e-01 88.7% 98.2%
3397689 243.1.1.91 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4518 0.57 51.0 3.95e-01 100.0% 74.4%
3783882 221.1.1.46 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg 0.57 46.0 3.55e-01 87.3% 52.5%
3527312 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 46.0 4.34e-01 88.7% 83.5%
3991647 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 45.0 3.80e-01 87.3% 69.6%
4669977 239.2.1.0 beta barrels › Ribosomal protein L25-like › HisI-like › HisI-like 0.57 49.0 4.24e-01 95.8% 73.6%
4175683 221.1.1.191 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › WDCP 0.57 45.0 4.24e-01 85.9% 90.6%
3111925 3114.1.1.2 beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP_2 0.57 44.0 4.27e-01 84.5% 86.3%
283305 221.3.1.3 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains › B1 0.57 43.0 4.34e-01 85.9% 83.1%
3797422 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 48.0 3.59e-01 95.8% 75.8%
3785086 870.1.1.1 a+b two layers › Hypothetical protein Yml108w › Hypothetical protein Yml108w › Hypothetical protein Yml108w › DUF1892 0.57 45.0 4.27e-01 85.9% 78.8%
1101007 3114.1.1.2 beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP_2 0.56 45.0 4.37e-01 85.9% 92.3%
4943669 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.56 47.0 3.46e-01 87.3% 51.5%
3704397 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 44.0 4.19e-01 85.9% 94.1%
5059000 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 46.0 4.12e-01 87.3% 91.6%
1266130 225.2.1.1 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.54 43.0 3.03e-01 88.7% 38.7%
3349329 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 47.0 4.02e-01 100.0% 92.5%
4976754 221.1.1.16 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TGS 0.54 43.0 4.07e-01 87.3% 87.1%
4967731 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.54 42.0 4.37e-01 88.7% 90.8%
4948984 225.2.1.1 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.54 42.0 2.98e-01 87.3% 45.0%
3904507 221.1.1.60 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_5 0.53 43.0 3.96e-01 87.3% 83.3%
4177594 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.53 41.0 4.31e-01 85.9% 92.3%
4037465 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.53 41.0 4.36e-01 85.9% 95.2%
4949573 225.2.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain 0.53 42.0 3.11e-01 88.7% 55.4%
5019926 225.2.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › PF28727 0.52 42.0 2.89e-01 87.3% 41.2%
1032929 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.52 40.0 3.75e-01 88.7% 65.6%
4548405 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.52 44.0 3.59e-01 98.6% 82.1%
5020150 221.10.1.1 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ 0.52 39.0 3.73e-01 88.7% 67.1%
4532362 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.52 41.0 4.24e-01 85.9% 92.3%
3424496 103.1.1.114 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › Auxin_inducible 0.52 36.0 3.68e-01 85.9% 77.1%
1759949 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.52 41.0 4.23e-01 87.3% 91.0%
4451373 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.52 40.0 4.30e-01 85.9% 100.0%
4058844 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.51 40.0 4.16e-01 85.9% 92.3%
4077181 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.51 40.0 4.27e-01 85.9% 100.0%
4427711 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.51 40.0 4.26e-01 85.9% 95.2%
3393738 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.51 39.0 3.98e-01 81.7% 92.9%
3196042 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.51 40.0 3.08e-01 85.9% 53.3%
5004889 225.2.1.1 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › Uncharacterized protein DIP2311 middle domain › Uncharacterized protein DIP2311 middle domain › HATPase_c_4 0.50 39.0 2.71e-01 87.3% 39.6%