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AP019415.2__BBI47389.1__X__00058
Bact-VirAP019415.2__BBI47389.1__X__00058
Identity
- Accession:
- AP019415 ↗
- Kingdom:
- phage
Quality
89.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-60
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vhlA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.66 | 38.0 | 2.36e-01 | 72.2% | 10.0% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.65 | 45.0 | 4.91e-01 | 88.9% | 100.0% |
| 1m2tB02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.65 | 48.0 | 3.71e-01 | 81.5% | 100.0% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.57 | 38.0 | 3.73e-01 | 98.1% | 63.8% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 45.0 | 2.83e-01 | 90.7% | 36.4% |
| 2f09A00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.57 | 43.0 | 3.88e-01 | 87.0% | 98.8% |
| 2dfuA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.57 | 42.0 | 4.50e-01 | 81.5% | 100.0% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 3.87e-01 | 88.9% | 83.7% |
| 4a2lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 45.0 | 2.94e-01 | 100.0% | 94.8% |
| 3k2zA02 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.56 | 47.0 | 3.77e-01 | 100.0% | 63.0% |
| 3v9fA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 44.0 | 2.90e-01 | 100.0% | 94.5% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 46.0 | 2.84e-01 | 100.0% | 95.8% |
| 3i8tA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 42.0 | 3.23e-01 | 87.0% | 87.9% |
| 1yzbA01 | 3.90.70.40 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.55 | 45.0 | 3.59e-01 | 100.0% | 84.7% |
| 6jpaE00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.54 | 41.0 | 3.07e-01 | 90.7% | 60.4% |
| 1vpkA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.53 | 36.0 | 2.82e-01 | 70.4% | 94.5% |
| 2jj6A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 38.0 | 2.99e-01 | 79.6% | 82.1% |
| 5nldB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 40.0 | 3.12e-01 | 87.0% | 87.7% |
| 3pvlA04 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 38.0 | 3.39e-01 | 90.7% | 77.8% |
| 1dl5A02 | 3.55.20.10 | Alpha Beta › 3-Layer(bab) Sandwich › Protein-l-isoaspartate O-methyltransferase; Chain: A, domain 2 › Protein-L-isoaspartyl O-methyltransferase, C-terminal domain | 0.52 | 37.0 | 3.00e-01 | 72.2% | 36.2% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 39.0 | 3.67e-01 | 85.2% | 81.2% |
| 1shyB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.52e-01 | 100.0% | 96.7% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.51 | 42.0 | 2.70e-01 | 100.0% | 34.2% |
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.51 | 38.0 | 3.80e-01 | 85.2% | 89.7% |
| 3e0rA02 | 3.10.180.40 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › C3-degrading proteinase like domains | 0.51 | 38.0 | 3.02e-01 | 100.0% | 37.2% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 39.0 | 3.71e-01 | 90.7% | 71.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4101476 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 50.0 | 4.57e-01 | 87.0% | 82.7% |
| 4930179 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 50.0 | 4.99e-01 | 87.0% | 89.1% |
| 3170251 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.63 | 49.0 | 3.72e-01 | 88.9% | 49.3% |
| 3524786 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.63 | 50.0 | 3.48e-01 | 90.7% | 71.8% |
| 5002449 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 48.0 | 4.82e-01 | 88.9% | 87.3% |
| 3489607 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.61 | 50.0 | 3.39e-01 | 92.6% | 72.1% |
| 5023740 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 46.0 | 4.73e-01 | 87.0% | 94.0% |
| 3290662 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 51.0 | 3.93e-01 | 100.0% | 92.3% |
| 3739320 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.59 | 49.0 | 3.36e-01 | 96.3% | 64.8% |
| 4957051 | 243.6.1.0 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain | 0.58 | 40.0 | 2.89e-01 | 72.2% | 75.2% |
| 3199229 | 220.1.1.112 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_10 | 0.58 | 44.0 | 3.28e-01 | 88.9% | 87.9% |
| 4100600 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.57 | 45.0 | 2.75e-01 | 90.7% | 25.3% |
| 3479602 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.56 | 45.0 | 3.05e-01 | 90.7% | 70.5% |
| 4014736 | 2003.1.4.14 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain › HET | 0.56 | 44.0 | 3.11e-01 | 94.4% | 96.1% |
| 3659150 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 41.0 | 3.28e-01 | 81.5% | 89.6% |
| 3820203 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.55 | 44.0 | 2.85e-01 | 94.4% | 37.9% |
| 3607829 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 41.0 | 2.95e-01 | 90.7% | 69.0% |
| 3814929 | 5.1.5.86 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 | 0.54 | 44.0 | 2.89e-01 | 100.0% | 92.5% |
| 3565925 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.53 | 41.0 | 2.73e-01 | 94.4% | 52.9% |
| 3576508 | 234.3.1.0 ↗ | a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain | 0.53 | 37.0 | 3.44e-01 | 74.1% | 64.3% |
| 3478959 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.52 | 41.0 | 2.89e-01 | 90.7% | 62.1% |
| 3630385 | 9.1.1.49 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 | 0.52 | 39.0 | 3.22e-01 | 87.0% | 89.6% |
| 3992780 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.51 | 40.0 | 2.72e-01 | 98.1% | 92.5% |
D2
medium
residues 75-155
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ew0A00 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.60 | 42.0 | 3.31e-01 | 72.8% | 98.3% |
| 2gs5A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.59 | 41.0 | 3.19e-01 | 72.8% | 91.5% |
| 3lovA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 40.0 | 3.36e-01 | 72.8% | 84.9% |
| 1l9fA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.58 | 40.0 | 3.11e-01 | 72.8% | 77.2% |
| 2aj2A01 | 3.40.1740.10 | Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like | 0.57 | 41.0 | 3.90e-01 | 76.5% | 86.6% |
| 4zn0A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 38.0 | 3.11e-01 | 71.6% | 84.4% |
| 2c5qA00 | 3.50.30.40 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Ribonuclease E inhibitor RraA/RraA-like | 0.53 | 44.0 | 3.29e-01 | 97.5% | 98.3% |
| 2e8eA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 39.0 | 3.39e-01 | 82.7% | 75.8% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3170251 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.73 | 50.0 | 4.09e-01 | 70.4% | 85.7% |
| 4639593 | 4113.1.1.1 ↗ | beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 | 0.62 | 43.0 | 3.34e-01 | 71.6% | 98.3% |
| 3275615 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.59 | 53.0 | 4.57e-01 | 100.0% | 88.4% |