Back to structures

AP019524.1__BBI90588.1__X__00196

Bact-Vir

AP019524.1__BBI90588.1__X__00196

Identity

Accession:
AP019524 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-59
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.78 59.0 3.73e-01 80.9% 55.3%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.77 54.0 3.14e-01 87.2% 9.4%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 56.0 4.11e-01 83.0% 87.2%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 56.0 4.09e-01 87.2% 82.3%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 37.0 3.10e-01 76.6% 29.9%
5vogA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.67 42.0 2.80e-01 89.4% 17.0%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 56.0 4.49e-01 100.0% 50.0%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.66 51.0 4.46e-01 85.1% 67.6%
1f2uB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 46.0 3.19e-01 87.2% 23.4%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.65 54.0 3.25e-01 93.6% 67.1%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.64 54.0 3.94e-01 95.7% 83.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 44.0 2.93e-01 74.5% 76.0%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.62 42.0 2.76e-01 70.2% 18.4%
3fv6A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.62 41.0 2.86e-01 78.7% 22.8%
4ku4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 48.0 3.27e-01 87.2% 52.6%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 47.0 3.35e-01 87.2% 80.7%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.60 53.0 2.97e-01 100.0% 12.2%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.01e-01 95.7% 85.4%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.59 51.0 3.47e-01 93.6% 85.1%
4p1mB01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.59 49.0 5.04e-01 91.5% 97.8%
5b55A01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 40.0 2.74e-01 74.5% 45.3%
4ykiA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 41.0 2.89e-01 74.5% 54.4%
1z1yA01 2.90.20.10 Mainly Beta › Orthogonal Prism › Plasmodium vivax P25 fold › Plasmodium vivax P25 domain 0.57 40.0 2.75e-01 74.5% 27.1%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.57 47.0 2.80e-01 93.6% 21.1%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 41.0 2.46e-01 85.1% 57.4%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 3.21e-01 91.5% 73.0%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 2.89e-01 89.4% 81.4%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.55 42.0 3.55e-01 83.0% 96.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 39.0 3.08e-01 76.6% 44.6%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 43.0 3.34e-01 85.1% 79.8%
4je3B00 3.10.20.720 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 37.0 3.18e-01 70.2% 49.4%
3a32A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 42.0 3.19e-01 95.7% 73.8%
3bzwF00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.52 41.0 2.63e-01 89.4% 37.9%
2ob0C01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 39.0 2.80e-01 85.1% 50.0%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.52 39.0 2.74e-01 78.7% 49.6%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 39.0 2.94e-01 80.9% 83.3%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.50 38.0 2.96e-01 100.0% 34.2%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839183 327.13.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.91 56.0 3.67e-01 100.0% 18.2%
3799597 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.87 54.0 4.28e-01 100.0% 35.3%
3241070 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.87 57.0 3.47e-01 91.5% 13.1%
3791945 5054.1.1.2 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.84 58.0 3.63e-01 72.3% 19.6%
3920672 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.82 54.0 4.26e-01 93.6% 35.6%
None 0.80 52.0 2.84e-01 93.6% 4.3%
3466238 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.79 53.0 3.02e-01 97.9% 7.3%
4149276 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.78 54.0 3.58e-01 93.6% 20.6%
3587660 857.1.1.1 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.77 58.0 3.97e-01 91.5% 26.4%
4054500 601.7.1.40 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.76 61.0 3.42e-01 87.2% 61.1%
5081199 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 55.0 3.71e-01 91.5% 24.0%
4303957 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.73 63.0 4.33e-01 95.7% 29.7%
3236725 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.73 55.0 3.38e-01 80.9% 21.2%
3954346 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.72 63.0 3.78e-01 95.7% 15.6%
5073431 1075.1.1.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.72 63.0 3.51e-01 95.7% 41.0%
4620055 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.71 57.0 3.55e-01 87.2% 21.7%
3882804 263.1.1.4 a+b three layers › SRF-like › SRF-like › SRF-like › PRAS_NT 0.70 38.0 3.36e-01 83.0% 39.1%
5060820 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.70 61.0 3.48e-01 100.0% 25.4%
3568614 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.69 48.0 2.91e-01 72.3% 30.3%
3649913 5050.1.1.58 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.69 57.0 3.72e-01 87.2% 38.8%
1815422 566.1.1.3 alpha complex topology › P40 nucleoprotein-like › P40 nucleoprotein-related › P40 nucleoprotein-related › Pneumo_ncap 0.69 55.0 3.55e-01 89.4% 49.5%
3317524 225.1.1.0 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.69 58.0 3.75e-01 95.7% 30.3%
4931277 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 56.0 3.83e-01 89.4% 43.9%
2979134 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.67 50.0 3.92e-01 85.1% 39.3%
4271417 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.67 52.0 3.22e-01 83.0% 63.5%
3056876 167.1.1.0 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 0.67 50.0 3.91e-01 85.1% 39.3%
3933447 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.67 51.0 3.93e-01 83.0% 57.1%
5010744 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 42.0 3.76e-01 72.3% 46.2%
3684317 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.67 48.0 2.67e-01 76.6% 38.4%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.67 46.0 3.94e-01 91.5% 45.3%
3321410 109.4.1.2586 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, Eplus_motif, E_motif 0.66 47.0 2.61e-01 74.5% 42.9%
3423625 109.4.1.1371 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, Eplus_motif, E_motif 0.66 48.0 2.69e-01 76.6% 47.2%
3236563 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.65 56.0 3.99e-01 100.0% 34.4%
3363453 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 44.0 3.99e-01 70.2% 56.9%
5082053 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 53.0 3.26e-01 89.4% 38.8%
3988478 857.1.1.1 a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.64 59.0 4.55e-01 100.0% 70.4%
4988512 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.64 54.0 3.63e-01 95.7% 40.4%
3932224 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.64 54.0 3.26e-01 91.5% 34.5%
5023262 327.11.2.82 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.64 47.0 4.24e-01 78.7% 61.5%
3680994 109.4.1.1269 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.64 43.0 2.55e-01 83.0% 9.3%
4940950 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.64 36.0 3.02e-01 76.6% 32.5%
4927759 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 55.0 3.71e-01 93.6% 85.6%
4029392 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.64 55.0 3.65e-01 95.7% 57.3%
4317544 4967.1.1.0 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.63 59.0 4.48e-01 100.0% 75.0%
5077851 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.63 54.0 3.76e-01 95.7% 54.7%
3991544 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 55.0 4.23e-01 97.9% 54.0%
3482807 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.62 48.0 3.85e-01 93.6% 38.9%
3684015 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 54.0 4.21e-01 97.9% 46.0%
3208120 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.62 56.0 3.75e-01 95.7% 85.8%
3463429 109.4.1.1335 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.62 42.0 2.45e-01 89.4% 7.0%
3282087 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 45.0 2.94e-01 78.7% 26.5%
3708645 230.4.1.0 a+b two layers › T-fold › ApbE-like › ApbE-like 0.61 54.0 4.09e-01 95.7% 55.2%
4564327 878.1.1.1 a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.61 47.0 3.82e-01 83.0% 65.1%
4923381 304.51.1.6 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 0.60 43.0 2.99e-01 78.7% 91.5%
5017690 101.1.6.43 alpha arrays › HTH › HTH › TrpR › DUF4277 0.60 37.0 2.74e-01 85.1% 20.8%
3958996 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 46.0 2.96e-01 87.2% 16.7%
3921728 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.60 55.0 4.03e-01 100.0% 41.7%
4974760 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 44.0 2.92e-01 80.9% 39.5%
5077058 304.51.1.1 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.58 42.0 3.09e-01 87.2% 28.8%
3581467 167.1.1.1 alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.58 47.0 3.36e-01 87.2% 34.6%
4027686 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 43.0 4.10e-01 78.7% 85.5%
3472076 101.1.1.7 alpha arrays › HTH › HTH › Three-helical HTH › Ribosomal_S18 0.58 44.0 3.20e-01 80.9% 85.2%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.57 48.0 2.89e-01 91.5% 24.4%
4952416 304.51.1.1 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C 0.56 43.0 3.09e-01 80.9% 31.2%
3367891 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.53 39.0 2.39e-01 80.9% 13.4%
3998628 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 38.0 2.80e-01 85.1% 57.0%
4797400 220.3.1.5 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop 0.52 35.0 3.50e-01 70.2% 75.0%
3576746 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.51 35.0 2.31e-01 83.0% 17.8%