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AP019524.1__BBI90594.1__X__00202

Bact-Vir

AP019524.1__BBI90594.1__X__00202

Identity

Accession:
AP019524 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shirahamavirus› Tenacibaculum_phage_PTm1

TaxID: 2547425

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-96
PDB
Domain cluster: rep: IMGVR_UViG_3300028706_000088-3300028706-Ga0257115_100177916__D4-87
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.66 42.0 4.98e-01 87.2% 100.0%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.65 52.0 4.44e-01 85.1% 100.0%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 39.0 3.67e-01 77.7% 49.6%
3qszA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 41.0 3.35e-01 95.7% 35.6%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.60 52.0 4.56e-01 93.6% 97.8%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 43.0 3.85e-01 74.5% 61.9%
2bi0A02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 42.0 3.61e-01 75.5% 59.2%
5egjA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 41.0 3.45e-01 76.6% 51.5%
4ncbA01 3.30.530.60 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.57 36.0 3.15e-01 71.3% 41.1%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.56 44.0 3.71e-01 85.1% 100.0%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 3.91e-01 90.4% 73.6%
4e0aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 44.0 3.75e-01 88.3% 58.3%
5fokA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.54 43.0 2.65e-01 84.0% 99.8%
1pzdA01 2.60.40.1480 Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain 0.54 48.0 4.07e-01 100.0% 93.6%
2k78A00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 4.14e-01 93.6% 92.9%
2i02A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.36e-01 75.5% 98.6%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.65e-01 76.6% 67.0%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.52 43.0 3.23e-01 92.6% 87.5%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.52 42.0 3.82e-01 86.2% 81.1%
2pwwA00 3.30.310.100 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YugN-like 0.52 40.0 3.72e-01 80.9% 74.8%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 46.0 4.09e-01 96.8% 77.1%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 31.0 3.19e-01 77.7% 61.5%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 36.0 3.27e-01 72.3% 67.2%
4tm5A01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.51 38.0 3.40e-01 78.7% 99.2%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.67e-01 96.8% 63.6%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.52e-01 87.2% 59.5%
7s7rA01 2.60.40.2860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.33e-01 78.7% 96.4%
3if8B03 6.20.270.10 Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › 0.50 29.0 3.61e-01 94.7% 91.7%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.50 36.0 3.51e-01 74.5% 76.5%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3188325 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.73 54.0 4.36e-01 76.6% 63.5%
3604270 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.67 48.0 4.32e-01 75.5% 88.5%
3179463 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.65 48.0 4.24e-01 77.7% 83.5%
5017300 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.65 47.0 4.32e-01 75.5% 90.8%
4675848 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.65 54.0 4.73e-01 90.4% 86.3%
3707760 2.1.1.225 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30388 0.63 38.0 3.49e-01 77.7% 46.7%
4959127 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 45.0 4.18e-01 74.5% 99.1%
4143581 9.2.1.8 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › PF27487 0.62 51.0 4.74e-01 90.4% 99.2%
4018022 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.62 45.0 4.19e-01 76.6% 80.5%
3979569 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 51.0 4.89e-01 90.4% 97.3%
4955607 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.61 49.0 3.71e-01 86.2% 38.6%
3192104 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.61 49.0 4.45e-01 86.2% 86.4%
3731945 3385.1.1.0 ↗ beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 0.60 50.0 4.42e-01 90.4% 74.6%
5074212 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.59 44.0 4.21e-01 78.7% 77.3%
3998954 223.2.1.37 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like 0.59 40.0 3.60e-01 70.2% 74.6%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 44.0 4.12e-01 78.7% 75.2%
4883064 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.57 50.0 3.67e-01 95.7% 81.9%
4000227 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 35.0 3.54e-01 74.5% 61.1%
2774101 12.3.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.56 50.0 3.62e-01 97.9% 88.9%
3502994 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 44.0 3.95e-01 84.0% 82.3%
5075730 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.56 41.0 3.89e-01 78.7% 98.3%
3728676 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 45.0 3.37e-01 88.3% 69.4%
3416305 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.55 42.0 2.84e-01 81.9% 26.9%
5036533 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.55 43.0 3.33e-01 88.3% 36.0%
3253359 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 39.0 2.74e-01 76.6% 55.9%
3236717 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.66e-01 73.4% 95.5%
4987319 1036.1.1.2 ↗ a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 0.54 44.0 4.23e-01 88.3% 82.7%
3897871 11.1.1.640 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N 0.54 40.0 3.77e-01 77.7% 87.6%
5054294 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 37.0 3.67e-01 77.7% 68.0%
3515333 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 40.0 4.08e-01 92.6% 83.3%
3933752 11.1.1.178 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.52 41.0 3.49e-01 85.1% 52.0%
4943853 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 3.70e-01 89.4% 75.9%
5005014 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.52 40.0 3.02e-01 81.9% 63.0%
3569201 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 36.0 2.51e-01 75.5% 71.1%
3803793 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.51 36.0 2.59e-01 72.3% 48.8%
3886322 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.51 37.0 2.50e-01 76.6% 49.4%
3770073 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 37.0 2.52e-01 76.6% 72.3%
3489971 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 4.12e-01 98.9% 86.7%
4448784 11.1.4.95 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF2057 0.51 37.0 3.49e-01 88.3% 62.6%
None — 0.51 46.0 3.30e-01 100.0% 36.3%
D2 medium residues 100-139
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pf6A00 6.10.250.2290 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.67 45.0 4.01e-01 70.0% 48.3%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.62 42.0 3.66e-01 70.0% 64.5%
1y9bA00 1.20.5.780 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Single helix bin 0.57 42.0 3.44e-01 82.5% 44.4%
2rjbA00 3.10.180.80 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › Uncharacterised protein PF07063, DUF1338 0.55 40.0 2.43e-01 97.5% 20.3%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.55 37.0 3.24e-01 70.0% 43.2%
1wh5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 39.0 3.25e-01 87.5% 76.2%