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AP019525.1__BBI90707.1__X__00007
Bact-VirAP019525.1__BBI90707.1__X__00007
Identity
- Accession:
- AP019525 ↗
- Kingdom:
- phage
Quality
44.7
mean pLDDT
Taxonomy
TaxID: 2547426
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-146
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.72 | 29.0 | 3.49e-01 | 100.0% | 54.4% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.66 | 36.0 | 4.36e-01 | 73.6% | 83.9% |
| 5cw7B00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.62 | 41.0 | 4.05e-01 | 75.9% | 62.8% |
| 3igmA00 | 1.20.5.2050 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.61 | 27.0 | 3.28e-01 | 94.3% | 60.7% |
| 3cpxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.61 | 36.0 | 4.09e-01 | 85.1% | 80.6% |
| 4j3cA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.60 | 42.0 | 4.72e-01 | 95.4% | 98.4% |
| 1qyaB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.59 | 42.0 | 3.59e-01 | 92.0% | 45.1% |
| 1rpyB00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.55 | 37.0 | 3.81e-01 | 100.0% | 70.9% |
| 4l69A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.55 | 39.0 | 4.28e-01 | 96.6% | 97.1% |
| 2rbcA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 38.0 | 2.67e-01 | 85.1% | 20.9% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.54 | 33.0 | 3.62e-01 | 92.0% | 76.1% |
| 2j3tC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.53 | 38.0 | 3.28e-01 | 75.9% | 46.1% |
| 6gfaA02 | 3.30.30.30 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.52 | 26.0 | 3.13e-01 | 89.7% | 73.2% |
| 2pt7C01 | 3.30.450.90 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.52 | 37.0 | 3.53e-01 | 75.9% | 100.0% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 43.0 | 2.99e-01 | 94.3% | 82.4% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 33.0 | 3.33e-01 | 79.3% | 63.3% |
| 3aiiA02 | 2.40.240.100 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › | 0.51 | 36.0 | 4.04e-01 | 94.3% | 100.0% |
| 4neoA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.51 | 36.0 | 3.72e-01 | 74.7% | 79.5% |
| 1efpB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 39.0 | 2.89e-01 | 83.9% | 54.1% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 39.0 | 2.78e-01 | 83.9% | 25.1% |
| 3kd6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 37.0 | 2.61e-01 | 81.6% | 22.3% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.50 | 35.0 | 3.70e-01 | 71.3% | 88.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3201503 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.69 | 39.0 | 4.12e-01 | 73.6% | 61.3% |
| 3476977 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.67 | 30.0 | 4.23e-01 | 89.7% | 90.0% |
| 3935767 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.58 | 51.0 | 3.55e-01 | 100.0% | 37.4% |
| 5024072 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 37.0 | 3.57e-01 | 71.3% | 54.3% |
| 5000843 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 39.0 | 3.66e-01 | 72.4% | 56.5% |
| 4111597 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.57 | 34.0 | 3.80e-01 | 86.2% | 78.5% |
| 3969735 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 41.0 | 4.49e-01 | 90.8% | 94.3% |
| 3996654 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 40.0 | 3.71e-01 | 73.6% | 66.4% |
| 4631894 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.55 | 38.0 | 3.44e-01 | 93.1% | 53.9% |
| 2817021 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.55 | 37.0 | 3.31e-01 | 70.1% | 49.2% |
| 3786890 | 874.1.1.0 ↗ | a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain | 0.54 | 33.0 | 2.64e-01 | 100.0% | 27.9% |
| 3783890 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.54 | 37.0 | 3.31e-01 | 73.6% | 48.9% |
| 4028315 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.53 | 36.0 | 3.42e-01 | 71.3% | 57.3% |
| 3840061 | 4991.1.1.0 ↗ | extended segments › Lag-3 N-terminal region › Lag-3 N-terminal region › Lag-3 N-terminal region | 0.53 | 44.0 | 2.95e-01 | 95.4% | 57.1% |
| 3205251 | 884.1.1.1 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › CobW_C | 0.52 | 43.0 | 3.99e-01 | 100.0% | 70.4% |
| 5015359 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.52 | 38.0 | 3.83e-01 | 88.5% | 76.5% |
| 3976834 | 4.1.1.156 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF2158 | 0.52 | 29.0 | 3.50e-01 | 100.0% | 92.0% |
| 3425673 | 252.2.1.1 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 | 0.52 | 27.0 | 3.23e-01 | 100.0% | 80.0% |
| 3199895 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.51 | 34.0 | 3.34e-01 | 79.3% | 62.1% |
| 3226500 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.51 | 37.0 | 2.71e-01 | 78.2% | 26.8% |
| 4498862 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.50 | 42.0 | 2.77e-01 | 95.4% | 62.6% |
| 3742689 | 5.1.4.661 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st | 0.50 | 42.0 | 2.93e-01 | 94.3% | 50.5% |
D2
high
residues 355-455
D3
medium
residues 148-241_264-323