←Back to structures
AP019560.1__BBJ33990.1__ORF_53__00053
Bact-VirAP019560.1__BBJ33990.1__ORF_53__00053
Identity
- Accession:
- AP019560 ↗
- Kingdom:
- phage
Quality
88.3
mean pLDDT
Taxonomy
TaxID: 2495553
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-113
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ygyB03 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.60 | 43.0 | 3.78e-01 | 73.7% | 79.9% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 38.0 | 4.07e-01 | 75.8% | 75.0% |
| 3lhnA00 | 2.40.128.640 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 45.0 | 4.33e-01 | 81.1% | 88.8% |
| 2qdeA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 45.0 | 4.00e-01 | 83.2% | 98.5% |
| 2d9wA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 44.0 | 4.27e-01 | 85.3% | 93.6% |
| 5gvyA00 | 2.100.10.30 | Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain | 0.56 | 33.0 | 2.92e-01 | 91.6% | 37.2% |
| 3gd6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 41.0 | 3.61e-01 | 77.9% | 100.0% |
| 2oktA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 42.0 | 3.84e-01 | 81.1% | 100.0% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 32.0 | 3.73e-01 | 74.7% | 84.1% |
| 4r1kB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 39.0 | 3.49e-01 | 73.7% | 57.4% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.54 | 39.0 | 4.08e-01 | 76.8% | 100.0% |
| 2pmqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 40.0 | 3.66e-01 | 80.0% | 100.0% |
| 1txdA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 46.0 | 4.28e-01 | 95.8% | 85.1% |
| 2gl5A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 42.0 | 3.77e-01 | 84.2% | 98.5% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.53 | 40.0 | 3.48e-01 | 78.9% | 75.5% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.53 | 41.0 | 3.50e-01 | 87.4% | 62.3% |
| 5a67A00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.53 | 40.0 | 3.20e-01 | 83.2% | 62.6% |
| 3mkcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 38.0 | 3.31e-01 | 75.8% | 95.1% |
| 4e4fA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 39.0 | 3.43e-01 | 78.9% | 87.2% |
| 3q45A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 40.0 | 3.64e-01 | 83.2% | 98.4% |
| 2z4hA01 | 2.40.128.300 | Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain | 0.51 | 39.0 | 4.28e-01 | 83.2% | 98.7% |
| 3rcyB01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.51 | 38.0 | 3.33e-01 | 77.9% | 88.7% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3498837 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.60 | 51.0 | 3.05e-01 | 93.7% | 14.5% |
| 3638115 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.59 | 42.0 | 3.99e-01 | 73.7% | 72.5% |
| 138255 | 9.1.1.6 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE | 0.58 | 45.0 | 4.31e-01 | 81.1% | 88.0% |
| 3343692 | 4.2.1.6 ↗ | beta barrels › SH3 › SAND › SAND › SAND_ULT1 | 0.57 | 46.0 | 4.28e-01 | 87.4% | 70.3% |
| 3488069 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 47.0 | 3.12e-01 | 90.5% | 51.0% |
| 3937948 | 220.1.1.47 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 | 0.56 | 49.0 | 4.18e-01 | 95.8% | 72.9% |
| 3602029 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.56 | 42.0 | 3.41e-01 | 82.1% | 50.8% |
| 3628091 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.54 | 41.0 | 2.51e-01 | 82.1% | 22.0% |
| 4330226 | 4252.1.1.13 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF27123 | 0.54 | 41.0 | 3.95e-01 | 83.2% | 95.5% |
| 3606892 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.53 | 36.0 | 3.26e-01 | 85.3% | 52.0% |
| 3934844 | 206.1.1.44 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › DUF1679 | 0.53 | 41.0 | 2.74e-01 | 83.2% | 60.5% |
| 3527512 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.52 | 45.0 | 3.93e-01 | 92.6% | 72.9% |
| 3576021 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 45.0 | 4.06e-01 | 94.7% | 73.1% |
| 3519971 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.52 | 43.0 | 3.60e-01 | 93.7% | 66.3% |
| 3956719 | 4252.1.1.14 ↗ | beta barrels › AttH-like › AttH-like › AttH-like › PF30556 | 0.52 | 41.0 | 3.36e-01 | 86.3% | 88.8% |
| 3431723 | 206.1.1.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC | 0.52 | 39.0 | 2.61e-01 | 81.1% | 29.6% |
| 3265309 | 4026.1.1.0 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) | 0.52 | 42.0 | 3.71e-01 | 89.5% | 70.8% |
| 3933112 | 206.1.1.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase,FATC | 0.51 | 36.0 | 2.39e-01 | 74.7% | 25.2% |
| 3959060 | 4252.1.1.0 ↗ | beta barrels › AttH-like › AttH-like › AttH-like | 0.51 | 39.0 | 3.29e-01 | 84.2% | 91.3% |
| 4229823 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.51 | 37.0 | 3.24e-01 | 84.2% | 51.4% |
| 3197358 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 3.42e-01 | 94.7% | 69.2% |
| 3389726 | 868.1.1.5 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med18 | 0.51 | 41.0 | 3.27e-01 | 89.5% | 53.2% |
| 3231323 | 60.1.1.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain | 0.51 | 38.0 | 3.43e-01 | 80.0% | 80.0% |
| 3672263 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 42.0 | 2.79e-01 | 94.7% | 42.9% |
| 5055383 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.51 | 37.0 | 3.12e-01 | 76.8% | 55.6% |
| 3383499 | 5.1.4.78 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › TFIIIC_delta | 0.51 | 42.0 | 2.76e-01 | 93.7% | 29.0% |
| 4884460 | 5.1.3.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase | 0.51 | 41.0 | 3.21e-01 | 91.6% | 42.0% |
| 3782309 | 5.1.5.236 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st | 0.50 | 42.0 | 2.82e-01 | 93.7% | 27.7% |
| 3598766 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 36.0 | 2.43e-01 | 76.8% | 26.5% |
| 3451821 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.50 | 43.0 | 2.87e-01 | 93.7% | 41.6% |
| 3917243 | 220.1.1.32 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind | 0.50 | 42.0 | 3.65e-01 | 93.7% | 74.7% |
| 3749496 | 5.1.3.99 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FG-GAP_3 | 0.50 | 41.0 | 2.70e-01 | 91.6% | 36.6% |
| 4012405 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.50 | 42.0 | 2.78e-01 | 93.7% | 39.1% |
D2
medium
residues 1-18_118-160
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bvsF03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 31.0 | 3.55e-01 | 77.0% | 60.0% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 46.0 | 4.28e-01 | 73.8% | 66.7% |
| 2khvA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.61 | 42.0 | 3.84e-01 | 77.0% | 52.9% |
| 1hdlA00 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.56 | 39.0 | 4.04e-01 | 90.2% | 81.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4975983 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.67 | 59.0 | 4.45e-01 | 100.0% | 41.4% |
| 3807764 | 190.1.1.0 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box | 0.61 | 56.0 | 5.17e-01 | 100.0% | 88.0% |
| 4954372 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.59 | 46.0 | 3.02e-01 | 88.5% | 29.1% |
| 4405869 | 101.1.2.451 ↗ | alpha arrays › HTH › HTH › winged helix domain › NPR3 | 0.55 | 41.0 | 3.64e-01 | 82.0% | 65.6% |