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AP019560.1__BBJ33997.1__ORF_60__00060

Bact-Vir

AP019560.1__BBJ33997.1__ORF_60__00060

Identity

Accession:
AP019560 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-13_26-74
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 71.0 5.20e-01 100.0% 50.0%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 69.0 5.72e-01 100.0% 76.2%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 69.0 5.36e-01 100.0% 59.5%
2hgcA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 6.10e-01 98.3% 93.6%
1z7uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 70.0 5.59e-01 100.0% 69.1%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 63.0 5.25e-01 93.3% 77.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 68.0 5.63e-01 100.0% 77.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 68.0 5.65e-01 100.0% 76.0%
4hqeA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 69.0 5.60e-01 100.0% 75.2%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 68.0 5.70e-01 100.0% 77.6%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 67.0 5.56e-01 100.0% 75.5%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 66.0 5.71e-01 98.3% 93.3%
1yyvB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 66.0 5.34e-01 100.0% 68.8%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 67.0 5.63e-01 100.0% 84.4%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 64.0 5.29e-01 100.0% 76.4%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 4.94e-01 100.0% 72.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 64.0 5.32e-01 100.0% 78.6%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 64.0 5.15e-01 100.0% 70.5%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 64.0 4.88e-01 100.0% 59.0%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.46e-01 100.0% 96.7%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 63.0 4.81e-01 100.0% 56.2%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 63.0 5.21e-01 100.0% 75.2%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 59.0 4.79e-01 100.0% 73.3%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 4.52e-01 98.3% 84.3%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 4.60e-01 98.3% 73.0%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.42e-01 91.7% 71.2%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.52e-01 81.7% 84.4%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 55.0 4.39e-01 96.7% 69.2%
2hxsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 42.0 3.03e-01 71.7% 55.6%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 49.0 4.45e-01 90.0% 90.2%
1vdhA01 3.30.70.1030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 0.60 40.0 3.18e-01 70.0% 35.5%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 52.0 4.17e-01 96.7% 69.6%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.56 29.0 2.29e-01 81.7% 23.0%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 33.0 2.82e-01 86.7% 37.5%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.54 38.0 3.45e-01 78.3% 60.0%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.54 37.0 2.74e-01 85.0% 26.5%
3jq0A00 1.25.40.390 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 39.0 2.30e-01 76.7% 19.2%
1uzxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 39.0 3.04e-01 81.7% 81.4%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 42.0 3.14e-01 100.0% 38.9%
1yz7A02 3.30.70.1130 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › EIF_2_alpha 0.52 38.0 3.34e-01 78.3% 70.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.51 38.0 3.13e-01 80.0% 91.0%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 42.0 3.43e-01 100.0% 69.5%
3hfqA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.71e-01 96.7% 31.2%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 2.80e-01 100.0% 47.3%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.09e-01 78.3% 75.7%
2qybA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 34.0 2.69e-01 71.7% 49.0%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 36.0 2.97e-01 78.3% 68.0%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969012 101.1.2.485 alpha arrays › HTH › HTH › winged helix domain › DUF2513 0.80 72.0 6.24e-01 100.0% 88.9%
5062639 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.80 71.0 6.02e-01 96.7% 78.9%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 69.0 6.21e-01 96.7% 96.2%
5035685 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.77 71.0 5.47e-01 100.0% 67.7%
4947948 101.1.2.876 alpha arrays › HTH › HTH › winged helix domain › tRNA-synt_2d 0.77 69.0 6.13e-01 100.0% 92.9%
3782190 101.1.2.65 alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.77 65.0 5.26e-01 95.0% 90.4%
5010819 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 70.0 5.07e-01 100.0% 50.7%
4998174 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.75 70.0 4.81e-01 100.0% 46.1%
5058943 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 68.0 5.28e-01 98.3% 73.3%
4966215 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 68.0 4.83e-01 100.0% 49.1%
5050259 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 65.0 4.61e-01 100.0% 44.9%
4928248 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 67.0 5.11e-01 100.0% 58.5%
4970260 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 4.85e-01 98.3% 58.7%
4982343 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 4.78e-01 98.3% 56.8%
3360854 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.73 65.0 5.16e-01 100.0% 78.3%
4959599 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 67.0 5.32e-01 100.0% 74.6%
5058727 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 65.0 4.84e-01 98.3% 60.7%
5062171 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 4.82e-01 98.3% 58.0%
5070036 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 67.0 4.88e-01 100.0% 60.7%
4998735 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 5.01e-01 100.0% 73.3%
4943782 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 5.17e-01 100.0% 68.3%
5011620 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 66.0 5.70e-01 100.0% 87.8%
4989274 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 65.0 4.89e-01 100.0% 53.6%
5069500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 66.0 4.80e-01 100.0% 59.3%
4980445 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 64.0 4.74e-01 98.3% 68.3%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 64.0 5.32e-01 100.0% 78.6%
4989275 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 64.0 4.93e-01 100.0% 57.7%
5070663 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 63.0 4.76e-01 98.3% 62.1%
4969221 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.70 63.0 3.91e-01 100.0% 27.4%
5023661 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.69 57.0 4.45e-01 91.7% 64.3%
3802667 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.69 54.0 4.59e-01 88.3% 78.1%
3279209 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 60.0 4.35e-01 100.0% 49.1%
5027566 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 5.28e-01 98.3% 91.8%
5006003 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.67 56.0 4.44e-01 91.7% 66.7%
5050784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 59.0 5.19e-01 100.0% 93.3%
4943632 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.39e-01 91.7% 64.2%
3480534 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 56.0 4.55e-01 98.3% 85.0%
4992769 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.66 56.0 4.51e-01 91.7% 70.9%
3518019 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.66 58.0 4.42e-01 98.3% 72.9%
4961794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 59.0 4.64e-01 100.0% 74.4%
5080131 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.66 55.0 4.36e-01 91.7% 62.5%
3569598 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.65 55.0 4.29e-01 98.3% 78.6%
3667109 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.65 57.0 4.50e-01 98.3% 80.0%
164542 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.65 57.0 4.60e-01 98.3% 73.0%
4944735 101.1.2.542 alpha arrays › HTH › HTH › winged helix domain › ATPase_2 0.65 54.0 4.19e-01 90.0% 45.6%
4948149 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.60e-01 96.7% 69.1%
4014683 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.64 57.0 4.43e-01 100.0% 73.1%
4456198 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 51.0 3.61e-01 86.7% 45.9%
4967969 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.64 57.0 4.12e-01 98.3% 44.2%
3249715 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.64 56.0 4.44e-01 98.3% 79.2%
5019432 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.64 54.0 4.15e-01 91.7% 60.0%
3200582 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.63 55.0 4.37e-01 98.3% 78.4%
4022342 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.63 55.0 4.58e-01 98.3% 88.6%
3701433 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 52.0 4.30e-01 98.3% 91.7%
5068497 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.62 55.0 4.35e-01 96.7% 69.5%
415845 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.62 52.0 4.24e-01 96.7% 69.9%
4957324 101.1.2.920 alpha arrays › HTH › HTH › winged helix domain › HTH_TbsP_C 0.62 54.0 4.26e-01 96.7% 67.2%
3740624 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.62 55.0 4.30e-01 98.3% 80.0%
4978825 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 54.0 4.29e-01 96.7% 65.8%
3602715 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.62 54.0 4.21e-01 96.7% 64.0%
4032315 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.42e-01 91.7% 84.4%
4033792 101.1.2.214 alpha arrays › HTH › HTH › winged helix domain › DnaD_N 0.60 52.0 3.99e-01 96.7% 63.0%
3587631 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.59 42.0 3.11e-01 73.3% 81.4%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.59 43.0 2.94e-01 100.0% 21.3%
3614367 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.57 40.0 2.83e-01 75.0% 68.1%
2719886 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.55 46.0 2.62e-01 98.3% 19.8%
4329368 301.13.1.1 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV 0.55 39.0 3.09e-01 75.0% 74.4%
4352871 601.7.1.40 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.54 44.0 2.56e-01 93.3% 35.8%
5041224 306.2.1.0 a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.53 43.0 3.94e-01 95.0% 95.3%
4944834 3625.1.1.0 alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain 0.53 35.0 2.92e-01 88.3% 36.4%
4029970 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.52 37.0 3.44e-01 76.7% 65.0%
4028109 3525.1.1.0 alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.50 36.0 3.59e-01 80.0% 76.9%