Back to structures

ARIF-1

Euk-Vir

Lymantria_xylina_nucleopolyhedrovirus

ARIF-1__YP_003517879__Lymantria_xylina_nucleopolyhedrovirus__166921

Identity

Accession:
YP_003517879 ↗
Protein ID:
ARIF-1
Kingdom:
euk

Quality

69.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 75-206_251-297
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06770.19 best Arif-1 67.7 1.40e-18 54.8% 55.5%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lqgA00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.71 53.0 5.95e-01 89.4% 100.0%
1ciyA01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.70 52.0 4.81e-01 84.4% 61.1%
3d19B00 1.20.1260.120 Mainly Alpha › Up-down Bundle › Ferritin › Protein of unknown function DUF2935 0.69 51.0 4.45e-01 87.2% 51.1%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.69 41.0 5.10e-01 71.5% 98.1%
3dbyL00 1.20.1260.120 Mainly Alpha › Up-down Bundle › Ferritin › Protein of unknown function DUF2935 0.67 48.0 4.26e-01 84.9% 50.4%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.67 46.0 4.73e-01 80.4% 71.7%
1o5hA00 1.20.120.680 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle 0.66 52.0 5.07e-01 86.0% 74.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.65 36.0 4.60e-01 97.2% 92.2%
6dlzA01 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.65 55.0 5.54e-01 88.8% 100.0%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.65 42.0 5.07e-01 71.5% 100.0%
1qoyA00 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.65 58.0 4.93e-01 98.3% 85.1%
6me6B02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.65 51.0 4.35e-01 81.6% 89.3%
5ux2B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 43.0 4.01e-01 89.9% 55.1%
6h2dS01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.64 52.0 4.78e-01 83.2% 93.7%
2iakA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 44.0 4.37e-01 72.6% 66.1%
1xzpA02 1.20.120.430 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA modification GTPase MnmE domain 2 0.63 44.0 4.57e-01 70.4% 75.9%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.63 50.0 4.25e-01 82.1% 87.5%
5xnyA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.63 55.0 4.93e-01 93.9% 82.0%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.62 54.0 5.20e-01 91.1% 92.5%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 32.0 4.04e-01 70.9% 81.9%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 53.0 5.18e-01 91.1% 84.4%
2c0uA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.61 51.0 5.23e-01 92.2% 94.1%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.61 51.0 4.06e-01 89.9% 88.5%
6nsjA00 1.25.40.600 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › AmiS/UreI transporter 0.61 44.0 4.43e-01 89.9% 73.6%
5j1gA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 50.0 4.60e-01 87.2% 83.8%
1dofA01 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.60 52.0 4.68e-01 93.3% 81.1%
1q5nA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.60 52.0 4.70e-01 93.3% 81.5%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.60 44.0 4.01e-01 74.3% 91.4%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 33.0 4.05e-01 94.4% 82.4%
1tj7A02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.60 51.0 4.46e-01 93.3% 74.9%
4p3fA00 1.10.3450.40 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain 0.59 43.0 4.21e-01 82.7% 67.9%
3i9wA00 1.20.58.920 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 54.0 4.70e-01 100.0% 65.2%
6wngA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.59 52.0 4.54e-01 95.5% 80.8%
1auwA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.59 49.0 4.54e-01 92.2% 69.7%
3i9yA00 1.20.58.920 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 51.0 4.75e-01 100.0% 74.2%
1yfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.58 53.0 4.62e-01 98.9% 82.2%
2pfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.58 51.0 4.56e-01 96.1% 82.0%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.58 32.0 3.69e-01 78.8% 72.9%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.57 35.0 4.24e-01 77.7% 93.2%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.57 41.0 3.80e-01 74.3% 95.7%
8hk0C01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 44.0 4.73e-01 91.1% 98.7%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.56 41.0 3.90e-01 74.3% 96.2%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 39.0 3.58e-01 70.9% 60.4%
1s0pA01 1.25.40.330 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Adenylate cyclase-associated CAP, N-terminal domain 0.54 42.0 4.36e-01 83.2% 97.7%
7akwA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 42.0 3.95e-01 84.4% 85.1%
2fji101 1.10.357.50 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.53 42.0 4.02e-01 83.8% 88.0%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.52 31.0 3.60e-01 76.5% 83.7%
1xioA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 43.0 4.08e-01 91.1% 83.9%
6ircA01 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.51 32.0 3.09e-01 94.4% 55.2%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3794336 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.78 66.0 7.00e-01 97.2% 98.8%
3412240 174.1.1.33 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 0.77 55.0 6.40e-01 91.6% 100.0%
3225511 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.77 63.0 6.64e-01 92.7% 94.4%
3453655 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.77 53.0 6.21e-01 89.4% 100.0%
3918849 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.75 61.0 6.45e-01 91.6% 93.8%
3513004 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.75 65.0 6.84e-01 93.9% 98.2%
3559622 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.75 60.0 6.49e-01 86.6% 96.1%
3364022 174.1.1.33 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 0.75 53.0 6.17e-01 91.1% 100.0%
3901124 174.1.1.12 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › BCLP 0.74 60.0 6.54e-01 93.3% 100.0%
3523336 174.1.1.12 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › BCLP 0.73 64.0 6.59e-01 90.5% 96.5%
3869364 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.73 61.0 6.51e-01 90.5% 100.0%
3692136 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.73 64.0 6.57e-01 97.2% 97.1%
3220914 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.73 63.0 6.48e-01 95.0% 95.9%
3592140 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.73 54.0 6.09e-01 91.1% 100.0%
3270837 174.1.1.33 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 0.73 50.0 5.90e-01 84.9% 100.0%
4213065 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.73 59.0 6.21e-01 98.9% 93.8%
3212520 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.73 59.0 6.41e-01 95.5% 100.0%
3184071 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.71 61.0 6.21e-01 95.0% 93.1%
3617744 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.71 57.0 6.23e-01 89.9% 100.0%
3540760 633.21.1.10 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL 0.71 59.0 6.30e-01 87.7% 100.0%
3864732 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.71 62.0 6.37e-01 92.2% 98.2%
3239981 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.71 64.0 6.48e-01 98.3% 98.3%
3994797 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.71 57.0 6.05e-01 90.5% 96.1%
3276651 601.1.2.54 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › SCAMP 0.71 59.0 6.27e-01 91.1% 100.0%
3224989 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.70 53.0 5.92e-01 82.7% 100.0%
3998922 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.70 59.0 4.82e-01 91.1% 49.7%
3996812 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.70 54.0 5.71e-01 84.9% 89.4%
3801607 150.1.1.121 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PF29123 0.70 56.0 6.12e-01 92.7% 100.0%
3924137 601.54.1.5 alpha bundles › Four-helical up-and-down bundle › low CO2-inducible protein LCI1 › low CO2-inducible protein LCI1 › PF29123 0.70 56.0 6.13e-01 92.7% 100.0%
3255242 601.1.2.4 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_R4 0.70 51.0 5.44e-01 88.8% 85.0%
3592688 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.69 64.0 6.34e-01 98.3% 96.8%
3230678 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.69 60.0 6.21e-01 95.0% 98.2%
3796044 633.21.1.10 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL 0.69 57.0 6.06e-01 87.2% 96.9%
3214393 633.21.1.29 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › PF29123 0.69 56.0 6.08e-01 92.7% 100.0%
3623190 174.1.1.31 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF7027 0.69 58.0 6.12e-01 98.3% 99.4%
3552608 174.1.1.1 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin 0.69 54.0 5.88e-01 93.3% 98.0%
3179505 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.68 56.0 5.96e-01 89.9% 98.7%
3584903 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.68 54.0 5.75e-01 96.6% 94.2%
3607269 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.68 60.0 5.97e-01 92.7% 97.8%
3494149 601.1.2.6 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B 0.67 52.0 5.46e-01 90.5% 87.9%
3576407 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.67 43.0 5.26e-01 83.8% 99.1%
3193811 3758.1.1.0 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.67 60.0 4.98e-01 96.6% 84.7%
3629560 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.66 54.0 5.82e-01 91.1% 100.0%
3624720 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.65 56.0 5.37e-01 91.1% 100.0%
4236657 633.21.1.18 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CASP_dom 0.64 52.0 5.60e-01 86.0% 100.0%
3613649 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.64 46.0 4.42e-01 72.6% 78.5%
3251611 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 44.0 4.10e-01 72.6% 56.4%
3994518 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.64 59.0 5.71e-01 98.9% 93.0%
3517654 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.63 53.0 4.32e-01 88.8% 81.2%
4112476 633.13.1.1 alpha bundles › Bromodomain-like › DsbB-like › DsbB-like › DsbB 0.60 54.0 5.52e-01 96.6% 100.0%
3189017 5001.1.1.131 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › DUF7702 0.59 50.0 4.43e-01 90.5% 82.3%
4969034 5082.1.1.1 alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.59 45.0 4.41e-01 79.9% 91.5%
4018297 5069.1.1.11 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › DUF2306 0.59 50.0 4.40e-01 93.3% 96.7%
3681859 5069.1.3.54 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Per1 0.58 39.0 4.67e-01 83.2% 98.4%
3923798 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.58 42.0 3.84e-01 74.3% 88.9%
3488465 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.55 48.0 4.29e-01 93.9% 82.4%
3708620 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 43.0 3.61e-01 86.0% 68.6%