←Back to structures
ATP-dependent_Lon_protease
Euk-VirChrysochromulina_ericina_virus
ATP-dependent_Lon_protease__YP_009173654__Chrysochromulina_ericina_virus__455364
Identity
- Accession:
- YP_009173654 ↗
- Protein ID:
- ATP-dependent_Lon_protease
- Kingdom:
- euk
Quality
61.9
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Chrysochromulina_ericina_virus
TaxID: 455364
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 388-534
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 46.8 | 5.90e-12 | 96.6% | 93.9% |
| PF07728.21 | AAA_5 | 29.0 | 1.30e-06 | 94.6% | 97.8% |
D2
high
residues 540-636
Domain cluster:
rep: ATP-dependent_Lon_protease,_bacterial_type__YP_007354251__Acanthamoeba_polyphaga_moumouvirus__1269028__D651-727
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22667.3 best | Lon_lid | 29.3 | 7.80e-07 | 57.7% | 70.2% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qzmA00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.90 | 75.0 | 7.62e-01 | 100.0% | 89.4% |
| 7krzA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.88 | 72.0 | 7.72e-01 | 100.0% | 98.8% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.57 | 39.0 | 3.86e-01 | 71.1% | 66.3% |
| 3cb2B01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.57 | 43.0 | 3.18e-01 | 81.4% | 97.0% |
| 1osnC00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 2.93e-01 | 80.4% | 81.5% |
| 1vq8I00 | 1.10.10.250 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain | 0.54 | 28.0 | 3.24e-01 | 71.1% | 68.6% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 48.0 | 4.72e-01 | 100.0% | 97.1% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.51 | 45.0 | 4.11e-01 | 100.0% | 86.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4168904 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.93 | 81.0 | 8.18e-01 | 100.0% | 91.6% |
| 3811688 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.92 | 74.0 | 7.66e-01 | 100.0% | 88.9% |
| 4101608 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.92 | 76.0 | 7.91e-01 | 100.0% | 92.2% |
| 4283238 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.91 | 75.0 | 7.48e-01 | 100.0% | 83.0% |
| 4026993 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.91 | 75.0 | 8.04e-01 | 100.0% | 97.6% |
| 4513308 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.91 | 75.0 | 7.85e-01 | 100.0% | 93.3% |
| 4128497 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.91 | 76.0 | 7.87e-01 | 100.0% | 93.3% |
| 3249440 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.91 | 74.0 | 7.74e-01 | 100.0% | 92.2% |
| 4381474 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.90 | 74.0 | 7.76e-01 | 100.0% | 92.2% |
| 4504659 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.90 | 75.0 | 7.60e-01 | 100.0% | 88.4% |
| 3572283 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.90 | 78.0 | 7.76e-01 | 100.0% | 88.0% |
| 2706717 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.88 | 72.0 | 7.32e-01 | 100.0% | 87.4% |
| 2906440 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 61.0 | 6.94e-01 | 85.6% | 94.5% |
| 3237083 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.83 | 78.0 | 7.70e-01 | 100.0% | 95.0% |
| 4408820 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.81 | 76.0 | 7.14e-01 | 100.0% | 99.1% |
| 4010924 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.80 | 58.0 | 6.35e-01 | 100.0% | 90.0% |
| 4538967 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.80 | 77.0 | 7.19e-01 | 100.0% | 91.3% |
| 3653454 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.80 | 76.0 | 7.27e-01 | 100.0% | 93.6% |
| 4303879 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.79 | 76.0 | 7.11e-01 | 100.0% | 92.2% |
| 4346871 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.79 | 75.0 | 6.65e-01 | 100.0% | 93.8% |
| 3964162 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.78 | 74.0 | 7.19e-01 | 100.0% | 93.3% |
| 3640249 | 148.1.3.48 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Lon_lid | 0.77 | 74.0 | 6.89e-01 | 100.0% | 93.9% |
| 4584774 | 148.1.3.27 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_10 | 0.65 | 55.0 | 5.00e-01 | 100.0% | 69.2% |
| 3691623 | 148.1.3.212 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 | 0.64 | 51.0 | 5.17e-01 | 99.0% | 88.4% |
| 3194523 | 148.1.3.212 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 | 0.61 | 55.0 | 5.24e-01 | 100.0% | 83.5% |
| 3494364 | 3286.1.1.0 ↗ | alpha complex topology › Glypican insertion domain › Glypican insertion domain › Glypican insertion domain | 0.61 | 47.0 | 3.47e-01 | 83.5% | 73.6% |
| 4061047 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.53 | 47.0 | 4.05e-01 | 100.0% | 63.3% |
| 5009801 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 43.0 | 3.32e-01 | 88.7% | 63.8% |
| 3596069 | 168.1.1.0 ↗ | alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain | 0.51 | 38.0 | 2.87e-01 | 78.4% | 78.7% |
D3
medium
residues 276-335
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tklB01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 55.0 | 5.46e-01 | 73.3% | 75.8% |
| 3pt1A02 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.77 | 53.0 | 4.23e-01 | 73.3% | 39.2% |
| 3sfvB02 | 6.10.140.2010 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 53.0 | 3.66e-01 | 73.3% | 23.5% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.75 | 58.0 | 5.39e-01 | 83.3% | 80.3% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 53.0 | 5.37e-01 | 73.3% | 82.8% |
| 1r4gA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.75 | 58.0 | 6.16e-01 | 93.3% | 96.2% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 52.0 | 4.86e-01 | 73.3% | 66.2% |
| 1oksA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.72 | 56.0 | 5.95e-01 | 93.3% | 96.2% |
| 3kdrA01 | 1.20.1270.210 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.70 | 55.0 | 4.60e-01 | 86.7% | 64.2% |
| 1ywmA02 | 1.20.1270.150 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein | 0.69 | 59.0 | 5.44e-01 | 95.0% | 88.2% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.68 | 47.0 | 4.20e-01 | 73.3% | 51.7% |
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.65 | 57.0 | 5.09e-01 | 100.0% | 83.0% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.63 | 42.0 | 4.00e-01 | 70.0% | 90.8% |
| 6wfqC01 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.62 | 46.0 | 3.58e-01 | 81.7% | 35.2% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.61 | 51.0 | 4.73e-01 | 95.0% | 96.1% |
| 4aurA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 46.0 | 3.01e-01 | 86.7% | 95.6% |
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.58 | 44.0 | 3.81e-01 | 86.7% | 62.1% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.57 | 46.0 | 4.74e-01 | 91.7% | 98.2% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.54 | 42.0 | 3.93e-01 | 93.3% | 86.0% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 41.0 | 3.43e-01 | 96.7% | 57.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032045 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.93 | 64.0 | 5.26e-01 | 71.7% | 45.0% |
| 4566229 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.90 | 83.0 | 4.78e-01 | 100.0% | 12.7% |
| 3676849 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.90 | 81.0 | 5.12e-01 | 96.7% | 24.6% |
| 5017997 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.89 | 72.0 | 4.16e-01 | 86.7% | 10.8% |
| 1788857 | 2004.1.1.444 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, AAA_PrkA | 0.89 | 78.0 | 5.02e-01 | 95.0% | 68.8% |
| 3755476 | 3755.1.1.0 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related | 0.89 | 62.0 | 4.31e-01 | 73.3% | 26.9% |
| 3809145 | 5076.2.1.10 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ › PF29520 | 0.87 | 59.0 | 3.70e-01 | 71.7% | 15.3% |
| 4026992 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.87 | 79.0 | 4.56e-01 | 100.0% | 35.0% |
| 3731180 | 2004.1.1.420 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, TIP49 | 0.87 | 74.0 | 4.63e-01 | 93.3% | 18.7% |
| None | — | 0.86 | 79.0 | 4.54e-01 | 100.0% | 13.1% | |
| None | — | 0.86 | 77.0 | 4.94e-01 | 96.7% | 24.8% | |
| 4202466 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.86 | 59.0 | 6.64e-01 | 71.7% | 100.0% |
| 3240265 | 2004.1.1.184 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 | 0.85 | 62.0 | 3.83e-01 | 76.7% | 15.6% |
| None | — | 0.85 | 76.0 | 5.61e-01 | 96.7% | 43.7% | |
| 4213046 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.85 | 59.0 | 5.78e-01 | 73.3% | 72.3% |
| 4858809 | 2004.1.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 74.0 | 6.25e-01 | 95.0% | 60.0% |
| 4590389 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.84 | 59.0 | 4.26e-01 | 73.3% | 31.0% |
| 4951260 | 601.14.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin | 0.80 | 68.0 | 5.19e-01 | 95.0% | 57.1% |
| 4541195 | 3755.3.1.470 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › T3SSipB | 0.80 | 56.0 | 4.29e-01 | 73.3% | 36.9% |
| 4959101 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.78 | 64.0 | 4.15e-01 | 88.3% | 39.2% |
| 4544002 | 192.6.1.1 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE | 0.78 | 54.0 | 5.76e-01 | 71.7% | 90.0% |
| 3210490 | 192.6.1.6 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › VPS18_RING_C | 0.76 | 62.0 | 5.40e-01 | 88.3% | 64.4% |
| 3880737 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.72 | 61.0 | 4.34e-01 | 96.7% | 93.5% |
| 3450135 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.68 | 60.0 | 5.71e-01 | 100.0% | 90.0% |
| 4966687 | 192.3.1.1 ↗ | alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N | 0.68 | 58.0 | 5.24e-01 | 100.0% | 98.8% |
| 4946843 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.66 | 54.0 | 5.33e-01 | 91.7% | 93.8% |
| 3210910 | 102.1.1.62 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4473 | 0.51 | 40.0 | 3.75e-01 | 90.0% | 73.8% |
| 3244254 | 101.1.8.23 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF4473 | 0.51 | 39.0 | 3.67e-01 | 91.7% | 76.2% |