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AV2

Euk-Vir

Sweet_potato_leaf_curl_Henan_virus

AV2__YP_008198569__Sweet_potato_leaf_curl_Henan_virus__1489311

Identity

Accession:
YP_008198569 ↗
Protein ID:
AV2
Kingdom:
euk

Quality

74.0 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Geminiviridae› Begomovirus› Sweet_potato_leaf_curl_Henan_virus

TaxID: 1489311

Cluster

View cluster (245 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-93
PDB
Domain cluster: rep: V2__YP_010087190__Emilia_yellow_vein_Fujian_virus__2496575__D13-75
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01524.23 best Gemini_V2 76.8 1.70e-21 86.1% 82.0%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fzfA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.72 54.0 4.37e-01 79.7% 90.7%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.70 54.0 5.13e-01 83.5% 81.1%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.70 50.0 4.10e-01 75.9% 54.7%
3zciA00 1.20.58.1660 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 49.0 3.79e-01 81.0% 72.3%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.66 51.0 3.83e-01 84.8% 83.7%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.64 44.0 4.43e-01 83.5% 70.4%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.63 48.0 4.15e-01 79.7% 69.7%
2mgxA00 1.20.940.10 Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 0.62 43.0 3.63e-01 72.2% 72.5%
2r0rB00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.61 39.0 3.97e-01 70.9% 64.1%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 47.0 4.39e-01 84.8% 89.4%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 46.0 4.35e-01 79.7% 85.3%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 45.0 4.50e-01 79.7% 81.2%
6x6nA01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.59 41.0 3.65e-01 73.4% 83.8%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.58 44.0 4.14e-01 84.8% 67.3%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.58 44.0 3.57e-01 82.3% 100.0%
3rf7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.58 45.0 3.47e-01 83.5% 38.4%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.54 37.0 3.22e-01 72.2% 66.9%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 42.0 4.23e-01 86.1% 100.0%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 38.0 2.96e-01 78.5% 43.4%
1xvhB00 1.20.120.1850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) 0.52 40.0 3.57e-01 84.8% 87.3%
2lwdA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.52 38.0 3.63e-01 79.7% 91.7%
2rfqC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 39.0 3.10e-01 83.5% 88.6%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2426517 1120.1.1.1 ↗ alpha bundles › KSHV ORF49 protein › KSHV ORF49 protein › KSHV ORF49 protein › Herpes_BBRF1 0.74 54.0 3.66e-01 82.3% 22.3%
3654776 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.72 56.0 4.55e-01 84.8% 65.8%
4928468 633.12.1.1 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.69 53.0 5.14e-01 83.5% 77.5%
4469717 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.68 59.0 4.05e-01 98.7% 42.4%
3367369 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 50.0 4.40e-01 78.5% 59.1%
3988343 2004.1.1.363 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.67 52.0 2.91e-01 84.8% 8.1%
3184336 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.66 52.0 4.18e-01 84.8% 77.4%
5002309 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.66 49.0 3.81e-01 79.7% 37.7%
5057428 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.65 51.0 4.68e-01 86.1% 99.0%
3225163 633.21.1.0 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.64 50.0 4.26e-01 84.8% 78.5%
5060021 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 44.0 4.85e-01 72.2% 89.2%
5060253 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.64 44.0 4.86e-01 72.2% 90.8%
3945115 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.63 46.0 3.62e-01 77.2% 94.5%
3813322 109.4.1.927 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN 0.63 48.0 3.63e-01 86.1% 40.0%
None — 0.63 47.0 2.60e-01 82.3% 6.4%
4929286 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 42.0 4.57e-01 70.9% 84.6%
5007621 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.62 50.0 4.68e-01 86.1% 84.2%
3472797 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.62 46.0 3.94e-01 82.3% 58.6%
5012658 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.60 47.0 4.50e-01 84.8% 90.0%
5012657 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.59 45.0 4.27e-01 81.0% 77.9%
3440420 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.59 42.0 3.74e-01 77.2% 86.7%
None — 0.58 49.0 2.98e-01 94.9% 17.0%
5014267 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.57 41.0 4.37e-01 75.9% 92.9%
4982050 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 44.0 4.65e-01 84.8% 100.0%
4244765 1075.4.1.100 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › PF27758 0.56 45.0 3.23e-01 86.1% 70.0%
4981745 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.56 42.0 4.28e-01 82.3% 88.0%
5059271 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 43.0 4.13e-01 84.8% 80.0%
5061318 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.54 41.0 4.38e-01 82.3% 100.0%
3174902 611.1.1.1 ↗ alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer 0.53 45.0 3.70e-01 98.7% 96.2%
5062042 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.53 39.0 4.03e-01 81.0% 97.1%