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AV2_protein

Euk-Vir

Horsegram_yellow_mosaic_virus

AV2_protein__NP_981934__Horsegram_yellow_mosaic_virus__263793

Identity

Accession:
NP_981934 ↗
Protein ID:
AV2_protein
Kingdom:
euk

Quality

78.6 mean pLDDT

Taxonomy

Shotokuvirae› Cressdnaviricota› Repensiviricetes› Geplafuvirales› Geminiviridae› Begomovirus› Horsegram_yellow_mosaic_virus

TaxID: 263793

Cluster

View cluster (245 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-76
PDB
Domain cluster: rep: V2__YP_010087190__Emilia_yellow_vein_Fujian_virus__2496575__D13-75
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01524.23 best Gemini_V2 73.6 1.70e-20 100.0% 83.3%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3am6A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.73 62.0 4.29e-01 96.9% 39.3%
3pt1A02 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.72 61.0 4.84e-01 90.6% 85.8%
1iurA01 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.71 48.0 4.90e-01 70.3% 73.0%
1tfkB00 1.20.120.650 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D 0.71 56.0 5.11e-01 87.5% 81.4%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.70 54.0 4.61e-01 82.8% 62.1%
1uruA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.67 58.0 4.09e-01 98.4% 83.3%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.66 54.0 4.78e-01 93.8% 64.3%
4jvsA01 1.20.120.1700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.65 56.0 4.60e-01 100.0% 72.2%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 56.0 4.90e-01 98.4% 69.4%
1k04A02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.63 54.0 4.70e-01 100.0% 89.4%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.61 50.0 4.27e-01 100.0% 92.6%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 52.0 4.37e-01 100.0% 74.1%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.60 50.0 3.88e-01 96.9% 98.7%
3m7gA02 1.10.8.1010 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.59 53.0 4.62e-01 100.0% 87.4%
1kxpD04 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 48.0 4.64e-01 100.0% 98.7%
6x6nA01 1.20.120.260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain 0.55 43.0 3.69e-01 90.6% 71.8%
3rf7A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.55 47.0 3.55e-01 100.0% 37.8%
2r0rB00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.54 40.0 3.76e-01 79.7% 73.1%
5tkyA05 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 43.0 3.94e-01 93.8% 69.0%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.50 39.0 3.71e-01 87.5% 78.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3717847 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.76 67.0 5.03e-01 100.0% 65.6%
3367369 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 64.0 5.24e-01 95.3% 58.3%
3503459 109.4.1.942 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NOT1_connector 0.74 63.0 4.50e-01 98.4% 37.5%
4000187 5069.1.3.66 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › 7TM_GPCR_Srw 0.72 62.0 5.02e-01 96.9% 80.5%
3496050 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 59.0 4.18e-01 93.8% 59.0%
5057428 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.70 60.0 5.17e-01 98.4% 92.4%
3933727 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.69 58.0 5.66e-01 95.3% 84.3%
4381116 11.1.1.154 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.68 61.0 4.27e-01 100.0% 32.6%
3919688 4177.1.1.2 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR 0.65 54.0 3.79e-01 98.4% 71.7%
3228000 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.64 48.0 4.59e-01 81.2% 90.7%
3411019 7022.1.1.1 ↗ alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT 0.64 53.0 3.96e-01 93.8% 53.9%
3398320 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.63 51.0 4.97e-01 87.5% 84.3%
3466160 611.9.1.4 ↗ alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N 0.62 47.0 3.84e-01 84.4% 73.1%
4966687 192.3.1.1 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N 0.62 46.0 4.30e-01 82.8% 91.8%
3274397 101.1.1.19 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.59 49.0 3.80e-01 92.2% 42.9%
3938475 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.56 42.0 4.06e-01 82.8% 70.7%
4954045 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.54 42.0 4.13e-01 87.5% 85.5%