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AY082070.1__AAL96800.1__X__00030

Bact-Vir

AY082070.1__AAL96800.1__X__00030

Identity

Accession:
AY082070 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Clostridium_phage_phi3626

TaxID: 190478

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: rep: MH729379.1__AXY81274.1__AVP_158__00158__D2-65
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qqrA02 3.10.330.70 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.78 55.0 5.77e-01 74.6% 100.0%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.77 57.0 4.86e-01 78.0% 52.2%
2mamA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 4.40e-01 91.5% 56.8%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.63 43.0 3.35e-01 71.2% 85.6%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 45.0 4.63e-01 81.4% 94.5%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.59 33.0 3.48e-01 81.4% 60.0%
1pxfA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 3.68e-01 100.0% 45.9%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 34.0 3.03e-01 83.1% 38.4%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.56 42.0 2.89e-01 83.1% 93.6%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.03e-01 91.5% 71.2%
5dm6100 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.55 39.0 4.00e-01 76.3% 85.2%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.91e-01 83.1% 74.2%
1hxmB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 38.0 3.07e-01 78.0% 56.0%
2zbvC02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 39.0 3.37e-01 81.4% 78.4%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.12e-01 89.8% 100.0%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 40.0 3.67e-01 83.1% 96.2%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 46.0 2.77e-01 100.0% 15.4%
2yweA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.09e-01 91.5% 89.5%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 41.0 3.64e-01 93.2% 92.2%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.75e-01 89.8% 78.5%
2wnyA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.50 37.0 2.99e-01 84.7% 97.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3838774 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.85 73.0 5.91e-01 100.0% 52.4%
4554209 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.81 73.0 5.84e-01 100.0% 52.7%
4254576 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.79 69.0 5.77e-01 96.6% 59.0%
4083034 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.79 71.0 5.74e-01 100.0% 60.0%
4674798 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.78 71.0 5.69e-01 100.0% 57.3%
3964437 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.78 70.0 5.65e-01 100.0% 53.6%
4421311 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.77 70.0 5.65e-01 100.0% 54.5%
3601841 327.13.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system 0.77 70.0 4.87e-01 100.0% 32.8%
4486406 3430.1.1.1 ↗ a+b complex topology › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › Primosome assembly protein PriA 3' DNA-binding domain › PriA_3primeBD 0.77 69.0 5.59e-01 100.0% 54.5%
2775138 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 58.0 4.29e-01 86.4% 45.0%
4990489 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 51.0 5.46e-01 81.4% 98.0%
5070142 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.66 49.0 5.21e-01 81.4% 94.0%
3517362 69.1.1.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hint 0.60 52.0 3.96e-01 100.0% 57.6%
5016177 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 41.0 4.43e-01 81.4% 94.0%
5054197 304.16.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE 0.55 41.0 3.76e-01 81.4% 90.0%
1951917 375.1.1.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L33 0.55 39.0 4.00e-01 76.3% 85.2%
3405824 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 43.0 3.50e-01 89.8% 60.8%
5049603 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.54 40.0 3.39e-01 81.4% 80.0%
4996262 1.1.4.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Bacterial fluorinating enzyme-C › SAM_HAT_C 0.54 40.0 3.41e-01 81.4% 76.2%
3271377 375.1.1.296 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Dicty_spore_N 0.53 42.0 4.04e-01 100.0% 77.9%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 3.91e-01 84.7% 80.0%
3927852 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.52 39.0 3.44e-01 88.1% 52.6%
4029762 4956.1.1.0 ↗ a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.51 37.0 3.52e-01 78.0% 95.7%