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AY095314.2__AAM28374.1__X__00026

Bact-Vir

AY095314.2__AAM28374.1__X__00026

Identity

Accession:
AY095314 ↗
Kingdom:
phage

Quality

70.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Vipivirus› Vibrio_phage_VpV262

TaxID: 2907796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 32-93
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.81 73.0 5.22e-01 100.0% 43.0%
3ilkA02 1.10.8.590 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.79 69.0 6.67e-01 100.0% 86.8%
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.76 54.0 5.12e-01 95.2% 63.5%
3f8tA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 55.0 3.51e-01 88.7% 23.5%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.66 45.0 4.13e-01 71.0% 82.7%
3lkdB01 1.20.1260.30 Mainly Alpha › Up-down Bundle › Ferritin › N6 adenine-specific DNA methyltransferase, N-terminal domain 0.64 54.0 3.86e-01 93.5% 53.0%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.64 46.0 4.21e-01 80.6% 57.8%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 50.0 4.53e-01 88.7% 70.5%
1jrrA02 3.30.497.10 Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 0.61 52.0 3.57e-01 95.2% 83.3%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 55.0 4.55e-01 100.0% 98.1%
8cdaC01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.60 41.0 3.34e-01 88.7% 37.6%
2bk9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 43.0 3.22e-01 75.8% 72.5%
4gr6B00 1.10.1200.210 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX 0.59 48.0 4.10e-01 91.9% 64.8%
1w98B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 51.0 4.23e-01 100.0% 78.1%
3ckdA02 1.20.58.360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines 0.57 48.0 3.81e-01 91.9% 54.0%
7wd3A04 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.57 41.0 3.85e-01 93.5% 61.5%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 48.0 4.09e-01 95.2% 99.0%
4us5C00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.54 38.0 2.48e-01 98.4% 14.2%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.54 46.0 4.46e-01 93.5% 98.6%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.53 35.0 3.47e-01 79.0% 61.4%
1vfiA00 1.10.246.100 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Vanadium-binding protein 2 0.52 36.0 3.13e-01 95.2% 47.4%
2lvfA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.51 37.0 3.08e-01 79.0% 50.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3517742 2488.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.78 65.0 4.34e-01 100.0% 24.9%
4259065 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.76 68.0 6.39e-01 100.0% 88.0%
4157142 150.5.1.7 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › Mis12 0.75 53.0 4.30e-01 74.2% 59.1%
3217233 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.73 44.0 3.89e-01 71.0% 42.2%
3716897 183.1.1.0 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain 0.73 53.0 4.98e-01 85.5% 64.0%
2726576 183.1.1.1 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.73 58.0 5.30e-01 98.4% 65.9%
3942599 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 49.0 4.48e-01 77.4% 55.0%
5038821 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.72 60.0 3.98e-01 93.5% 31.6%
3867721 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.72 62.0 4.15e-01 100.0% 48.0%
4589579 148.1.3.172 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 0.71 52.0 4.95e-01 88.7% 65.3%
3360875 7015.1.1.4 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › PLAC8 0.70 55.0 4.51e-01 100.0% 46.1%
3406058 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.69 61.0 3.91e-01 100.0% 43.7%
3264507 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.68 59.0 5.58e-01 96.8% 89.3%
3937062 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 56.0 4.02e-01 91.9% 73.3%
3741238 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.66 48.0 4.69e-01 85.5% 70.0%
3481034 4009.1.1.0 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.66 52.0 4.84e-01 88.7% 78.8%
4995684 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.65 56.0 5.68e-01 91.9% 98.3%
3785121 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.65 59.0 5.47e-01 98.4% 82.7%
5044635 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.63 48.0 3.50e-01 83.9% 60.0%
4945101 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.62 48.0 3.40e-01 82.3% 59.4%
4952257 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.62 55.0 4.62e-01 100.0% 84.6%
3617518 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.62 55.0 5.33e-01 100.0% 90.0%
3615313 1128.1.1.2 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.62 50.0 4.75e-01 98.4% 80.0%
3185821 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.61 52.0 5.00e-01 100.0% 92.0%
3205548 632.7.1.51 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › Etd1 0.61 53.0 5.13e-01 100.0% 98.6%
3909404 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.60 48.0 4.14e-01 91.9% 78.1%
3554386 3755.3.1.309 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Mis12 0.60 41.0 3.62e-01 74.2% 50.0%
4998509 150.5.1.129 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › DPM2 0.58 42.0 3.81e-01 75.8% 97.5%
4363025 2008.1.1.195 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_Eco47II 0.57 44.0 3.00e-01 83.9% 38.3%
5035003 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.57 44.0 3.73e-01 85.5% 61.9%
2665668 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.56 37.0 3.71e-01 75.8% 67.7%
3814617 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.55 42.0 4.10e-01 87.1% 78.6%
3212403 3877.1.1.1 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.55 46.0 3.19e-01 100.0% 32.5%
3592885 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 41.0 4.25e-01 80.6% 86.7%
4406905 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.52 41.0 3.91e-01 88.7% 72.9%
3291671 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.52 45.0 2.68e-01 100.0% 41.4%