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AY095314.2__AAM28390.1__X__00042

Bact-Vir

AY095314.2__AAM28390.1__X__00042

Identity

Accession:
AY095314 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Vipivirus› Vibrio_phage_VpV262

TaxID: 2907796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-107
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kd6A00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.64 49.0 3.42e-01 79.2% 90.7%
1w63Q00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 42.0 3.69e-01 71.3% 58.1%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.60 31.0 3.95e-01 100.0% 83.6%
3ikhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.59 44.0 3.15e-01 78.2% 92.3%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 43.0 3.17e-01 78.2% 92.9%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 40.0 3.55e-01 71.3% 57.0%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.57 33.0 3.64e-01 75.2% 72.7%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.55 26.0 3.44e-01 98.0% 83.3%
3os7A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 37.0 2.66e-01 72.3% 97.9%
3bk2A03 3.10.20.580 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 38.0 3.88e-01 83.2% 79.8%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.51 45.0 4.18e-01 100.0% 93.9%
2kr6A01 1.10.472.100 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Presenilin 0.50 36.0 3.63e-01 81.2% 71.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070307 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.68 41.0 4.70e-01 100.0% 82.7%
4975535 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.67 40.0 4.41e-01 99.0% 73.8%
5047936 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 44.0 4.18e-01 70.3% 58.3%
3783468 223.2.1.9 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.65 45.0 3.88e-01 70.3% 50.0%
3979269 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.64 48.0 3.47e-01 78.2% 96.7%
3827127 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 35.0 3.68e-01 78.2% 56.8%
3251755 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.62 43.0 3.61e-01 70.3% 53.3%
5051622 2003.6.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.62 46.0 3.25e-01 78.2% 93.0%
3597359 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 43.0 3.74e-01 71.3% 57.3%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.62 43.0 3.67e-01 71.3% 55.5%
4947665 223.2.1.58 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Arf 0.60 41.0 3.89e-01 70.3% 60.0%
3585833 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 42.0 4.07e-01 72.3% 65.5%
4505972 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 40.0 2.85e-01 72.3% 26.6%
3690556 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.58 34.0 4.32e-01 76.2% 100.0%
5001238 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 39.0 3.85e-01 70.3% 64.5%
3925754 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 32.0 2.92e-01 100.0% 41.5%
3390566 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 39.0 3.93e-01 73.3% 78.0%
5045968 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 39.0 2.61e-01 77.2% 53.9%
5065641 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 37.0 3.33e-01 73.3% 52.7%
4345436 4325.1.1.1 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 0.53 37.0 4.19e-01 75.2% 98.7%
5029930 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 4.15e-01 86.1% 85.0%
3853196 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 36.0 3.24e-01 72.3% 87.1%
5003298 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 42.0 2.69e-01 89.1% 48.5%
4243634 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.52 36.0 4.10e-01 75.2% 97.3%
3905168 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 37.0 3.36e-01 73.3% 94.6%
5063918 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.51 35.0 2.79e-01 71.3% 99.5%