←Back to structures

AY095314.2__AAM28404.1__X__00055

Bact-Vir

AY095314.2__AAM28404.1__X__00055

Identity

Accession:
AY095314 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Vipivirus› Vibrio_phage_VpV262

TaxID: 2907796

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 69-162
PDB
Domain cluster: rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qexA02 2.60.120.640 Mainly Beta › Sandwich › Jelly Rolls › gp9 0.76 71.0 6.86e-01 100.0% 92.2%
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 60.0 6.14e-01 98.9% 92.4%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.70 60.0 5.76e-01 97.9% 80.7%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.97e-01 93.6% 65.8%
2nncA00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.54 37.0 3.56e-01 91.5% 60.9%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.34e-01 75.5% 76.6%
4gucA00 2.60.40.3720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.58e-01 92.6% 63.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184462 520.1.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 0.76 71.0 5.73e-01 100.0% 56.5%
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.69 59.0 5.99e-01 100.0% 93.6%
3276550 4312.2.1.0 ↗ a+b two layers › RelE-like › YaeB-like › YaeB-like 0.61 32.0 3.27e-01 97.9% 51.6%
5010182 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.27e-01 75.5% 80.0%
3938986 2485.1.1.55 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › FAF1 0.51 45.0 3.76e-01 98.9% 81.2%
4981578 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 40.0 3.93e-01 89.4% 76.2%
3964010 314.1.1.6 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB 0.51 39.0 3.08e-01 83.0% 88.1%
3164937 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.51 40.0 3.46e-01 89.4% 66.3%
D2 high residues 167-323
PDB
Domain cluster: rep: MT162467.2__QIN97119.1__X__00002__D257-294_394-493