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AY129339.1__AAN02111.1__PBI_BARNYARD_57__00057
Bact-VirAY129339.1__AAN02111.1__PBI_BARNYARD_57__00057
Identity
- Accession:
- AY129339 ↗
- Kingdom:
- phage
Quality
81.4
mean pLDDT
Taxonomy
TaxID: 205880
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-102
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ne5B04 | 6.10.140.730 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 46.0 | 5.37e-01 | 73.6% | 98.0% |
| 2jvgA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.67 | 47.0 | 4.74e-01 | 73.6% | 75.0% |
| 4dllB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.65 | 48.0 | 3.94e-01 | 77.8% | 86.2% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.65 | 52.0 | 4.72e-01 | 88.9% | 79.0% |
| 2dg8D00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.64 | 55.0 | 4.22e-01 | 97.2% | 67.6% |
| 2ggfA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 54.0 | 4.46e-01 | 97.2% | 82.5% |
| 1vpdA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.64 | 51.0 | 4.23e-01 | 88.9% | 90.8% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.63 | 46.0 | 3.80e-01 | 79.2% | 53.7% |
| 4f5cA04 | 1.25.50.20 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › | 0.63 | 54.0 | 3.55e-01 | 100.0% | 32.2% |
| 1vkeB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.62 | 48.0 | 4.35e-01 | 87.5% | 61.4% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.62 | 48.0 | 4.06e-01 | 86.1% | 98.4% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.60 | 46.0 | 3.61e-01 | 84.7% | 97.0% |
| 3ckyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.60 | 47.0 | 3.91e-01 | 87.5% | 92.5% |
| 3sp1A02 | 1.20.120.1910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cysteine-tRNA ligase, C-terminal anti-codon recognition domain | 0.59 | 44.0 | 3.61e-01 | 100.0% | 40.4% |
| 2qeuB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.58 | 47.0 | 3.96e-01 | 91.7% | 51.1% |
| 7qihA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 43.0 | 3.92e-01 | 100.0% | 57.4% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 51.0 | 4.14e-01 | 100.0% | 67.6% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 49.0 | 4.15e-01 | 95.8% | 91.7% |
| 6xssA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 40.0 | 4.10e-01 | 100.0% | 79.7% |
| 4rg9B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 44.0 | 3.53e-01 | 91.7% | 39.5% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.56 | 38.0 | 3.39e-01 | 70.8% | 83.6% |
| 2vq2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 43.0 | 3.11e-01 | 100.0% | 27.3% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 45.0 | 4.06e-01 | 93.1% | 64.8% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 47.0 | 4.02e-01 | 97.2% | 87.8% |
| 4z7xB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 39.0 | 2.85e-01 | 73.6% | 66.8% |
| 1r4wA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 40.0 | 2.84e-01 | 75.0% | 29.3% |
| 5dikA00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.55 | 43.0 | 3.88e-01 | 91.7% | 59.8% |
| 3gruA02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.55 | 39.0 | 3.69e-01 | 75.0% | 73.3% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.55 | 44.0 | 4.47e-01 | 93.1% | 91.8% |
| 2dbfA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.55 | 36.0 | 3.44e-01 | 70.8% | 53.8% |
| 4fymF00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 46.0 | 3.40e-01 | 98.6% | 45.9% |
| 2lhrA00 | 1.20.58.1270 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 39.0 | 3.81e-01 | 95.8% | 71.8% |
| 3kfwX03 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 46.0 | 4.58e-01 | 97.2% | 93.4% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.53 | 47.0 | 3.85e-01 | 100.0% | 66.7% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.53 | 45.0 | 3.96e-01 | 93.1% | 68.9% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.53 | 43.0 | 4.24e-01 | 87.5% | 88.3% |
| 1lm3B00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.52 | 44.0 | 3.93e-01 | 94.4% | 76.4% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 41.0 | 3.61e-01 | 88.9% | 86.1% |
| 2zueA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.51 | 43.0 | 3.77e-01 | 100.0% | 77.3% |
| 5mmjo00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.51 | 37.0 | 3.67e-01 | 76.4% | 85.3% |
| 3varA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 43.0 | 2.89e-01 | 98.6% | 81.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3708001 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.73 | 50.0 | 5.13e-01 | 73.6% | 74.3% |
| 5071173 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.69 | 51.0 | 3.35e-01 | 79.2% | 22.0% |
| 4676423 | 5000.1.1.1 ↗ | alpha arrays › Toxins' membrane translocation domains › Colicin › Colicin › Colicin | 0.68 | 60.0 | 4.37e-01 | 100.0% | 45.9% |
| 4073017 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.66 | 47.0 | 5.19e-01 | 80.6% | 98.2% |
| 3727900 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.65 | 52.0 | 4.34e-01 | 87.5% | 52.0% |
| 3895121 | 4030.1.1.3 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Exog_C | 0.64 | 45.0 | 4.73e-01 | 86.1% | 84.1% |
| 5049115 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.63 | 50.0 | 3.23e-01 | 86.1% | 20.3% |
| 5075461 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.63 | 49.0 | 4.21e-01 | 86.1% | 51.7% |
| 4944933 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.63 | 48.0 | 4.27e-01 | 87.5% | 56.4% |
| 3220649 | 109.4.1.375 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRC8_N | 0.63 | 47.0 | 3.14e-01 | 81.9% | 43.0% |
| 3227 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.62 | 48.0 | 4.16e-01 | 87.5% | 53.0% |
| 4981494 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.62 | 47.0 | 4.22e-01 | 87.5% | 56.4% |
| 5072175 | 608.1.1.0 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like | 0.62 | 50.0 | 4.64e-01 | 91.7% | 71.0% |
| 5076342 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.62 | 49.0 | 4.52e-01 | 91.7% | 68.0% |
| 3987909 | 138.1.1.9 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C | 0.61 | 47.0 | 3.91e-01 | 84.7% | 96.3% |
| 3245358 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.61 | 50.0 | 3.49e-01 | 100.0% | 27.1% |
| 4960186 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.61 | 51.0 | 4.50e-01 | 95.8% | 62.7% |
| 3369910 | 109.4.1.1241 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIR3_bundle | 0.60 | 53.0 | 3.09e-01 | 100.0% | 23.6% |
| 4985982 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.60 | 49.0 | 4.04e-01 | 91.7% | 49.2% |
| 5072693 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.60 | 48.0 | 4.30e-01 | 91.7% | 62.0% |
| 3770410 | 109.4.1.465 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPO22 | 0.59 | 51.0 | 4.04e-01 | 97.2% | 56.0% |
| 3934585 | 3755.3.1.465 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A | 0.59 | 45.0 | 3.58e-01 | 83.3% | 97.3% |
| 4249203 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.57 | 45.0 | 4.12e-01 | 87.5% | 77.0% |
| 5071514 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.57 | 45.0 | 4.44e-01 | 84.7% | 90.7% |
| 4978717 | 608.1.1.1 ↗ | alpha arrays › AhpD-like › AhpD-like › AhpD-like › CMD | 0.57 | 45.0 | 4.11e-01 | 91.7% | 63.8% |
| 3423121 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.55 | 47.0 | 3.36e-01 | 100.0% | 32.5% |
| 3504338 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.55 | 45.0 | 3.95e-01 | 93.1% | 85.2% |
| 3738569 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.54 | 43.0 | 3.87e-01 | 90.3% | 99.0% |
| 3505729 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 44.0 | 3.97e-01 | 91.7% | 86.0% |
| 3477777 | 4177.1.1.12 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FAM92 | 0.53 | 36.0 | 2.51e-01 | 70.8% | 23.0% |
| 3530949 | 3291.1.1.231 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF27745 | 0.53 | 44.0 | 3.64e-01 | 100.0% | 96.7% |
| 3414696 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.53 | 44.0 | 3.28e-01 | 97.2% | 76.2% |
| 3221766 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 43.0 | 3.88e-01 | 93.1% | 83.8% |
| 3392286 | 604.7.1.1 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › TBCA | 0.52 | 40.0 | 3.53e-01 | 84.7% | 98.2% |
| 3774575 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.52 | 41.0 | 4.12e-01 | 93.1% | 85.3% |
| 3374878 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 44.0 | 3.31e-01 | 98.6% | 47.7% |
| 3395879 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.51 | 44.0 | 3.09e-01 | 100.0% | 39.2% |
| 3508503 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.51 | 43.0 | 3.07e-01 | 100.0% | 30.8% |