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AY129339.1__AAN02156.1__PBI_BARNYARD_102__00102

Bact-Vir

AY129339.1__AAN02156.1__PBI_BARNYARD_102__00102

Identity

Accession:
AY129339 ↗
Kingdom:
phage

Quality

85.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Barnyardvirus› Mycobacterium_phage_Barnyard

TaxID: 205880

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-76
PDB
Domain cluster: rep: NC_054393.1__YP_010049738.1__KCH40_gp098__00069__D48-104
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.75 44.0 4.54e-01 76.7% 60.6%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 49.0 4.78e-01 79.5% 95.1%
2h5eA03 3.30.70.3280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III 0.63 48.0 3.92e-01 82.2% 83.2%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.62 42.0 4.36e-01 71.2% 100.0%
3bs9A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 42.0 4.16e-01 72.6% 100.0%
3smzA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 44.0 4.08e-01 78.1% 88.7%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 3.69e-01 75.3% 90.7%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 44.0 4.23e-01 78.1% 97.7%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 44.0 4.34e-01 78.1% 97.5%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 41.0 4.07e-01 72.6% 98.7%
1i1gA02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.60 44.0 4.36e-01 79.5% 100.0%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 3.60e-01 74.0% 93.9%
2qz8A02 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.59 42.0 4.06e-01 74.0% 88.9%
2mkcA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 43.0 3.79e-01 80.8% 72.0%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.59 43.0 4.44e-01 76.7% 98.5%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 42.0 3.92e-01 76.7% 88.3%
5t9pA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 43.0 4.11e-01 79.5% 96.6%
3s8sA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 42.0 3.71e-01 75.3% 75.7%
1h2vZ00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 42.0 3.96e-01 78.1% 89.2%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 46.0 4.23e-01 87.7% 100.0%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.58 45.0 4.14e-01 83.6% 96.8%
6ztgA01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.58 40.0 4.06e-01 74.0% 100.0%
2ivdA02 3.90.660.20 Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 0.58 41.0 3.08e-01 74.0% 49.5%
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 41.0 3.94e-01 75.3% 95.2%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.57 41.0 3.78e-01 76.7% 91.7%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 39.0 2.75e-01 72.6% 86.2%
2mgzA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 41.0 3.87e-01 78.1% 86.2%
5w0hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 39.0 3.86e-01 72.6% 100.0%
2qswA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 38.0 3.62e-01 71.2% 85.6%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 40.0 3.51e-01 75.3% 95.6%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 40.0 3.79e-01 75.3% 94.4%
1whwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 40.0 3.79e-01 78.1% 89.4%
4pkdB02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 39.0 3.49e-01 75.3% 74.3%
3p96A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 40.0 3.85e-01 76.7% 95.2%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 41.0 3.84e-01 79.5% 92.3%
1sxvA00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.55 40.0 3.21e-01 79.5% 46.9%
3o1lB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 39.0 3.72e-01 75.3% 93.2%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 39.0 3.78e-01 76.7% 96.4%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.35e-01 75.3% 95.7%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 39.0 3.82e-01 78.1% 97.5%
1darA05 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.67e-01 76.7% 82.8%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 37.0 2.46e-01 72.6% 54.9%
3uaqB01 2.40.128.250 Mainly Beta › Beta Barrel › Lipocalin › 0.53 37.0 3.28e-01 74.0% 94.5%
1gmuA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.52 38.0 3.92e-01 76.7% 91.0%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 37.0 3.59e-01 75.3% 96.4%
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.52 39.0 3.27e-01 82.2% 72.7%
3n0vA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 37.0 3.54e-01 75.3% 97.6%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.65e-01 82.2% 96.6%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 37.0 3.38e-01 79.5% 84.1%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.56e-01 80.8% 94.7%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.51 32.0 3.71e-01 74.0% 100.0%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961283 101.1.2.935 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C 0.78 45.0 3.90e-01 74.0% 38.5%
4985395 304.4.1.75 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › GYD 0.62 44.0 4.40e-01 74.0% 100.0%
4648413 304.4.1.20 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.62 46.0 4.19e-01 80.8% 81.0%
4105022 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.61 46.0 4.28e-01 79.5% 86.7%
4345964 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.61 44.0 4.05e-01 76.7% 78.9%
137107 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.61 45.0 4.34e-01 80.8% 90.7%
4373827 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.61 44.0 4.21e-01 78.1% 86.4%
3587356 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.61 44.0 4.16e-01 78.1% 84.4%
5249 304.8.1.9 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.60 44.0 4.23e-01 78.1% 97.7%
3931549 317.1.1.1 ↗ a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › IF4E 0.60 43.0 3.26e-01 75.3% 50.3%
4939299 304.24.1.3 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III 0.60 45.0 4.23e-01 80.8% 86.7%
3942509 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.60 45.0 4.17e-01 82.2% 92.6%
3587109 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.59 44.0 4.14e-01 79.5% 85.6%
4929538 304.4.1.1 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg 0.59 44.0 4.27e-01 82.2% 94.1%
3797612 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 43.0 4.12e-01 78.1% 97.6%
4394754 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.59 43.0 4.09e-01 79.5% 83.3%
5035636 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.59 46.0 4.22e-01 87.7% 100.0%
4930274 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 43.0 4.08e-01 79.5% 84.4%
4953567 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 41.0 4.04e-01 74.0% 96.2%
3823922 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 42.0 3.61e-01 76.7% 70.0%
3785119 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 45.0 3.74e-01 84.9% 72.6%
3496728 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 40.0 3.79e-01 72.6% 83.3%
5048300 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 42.0 3.73e-01 76.7% 75.2%
4945348 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.58 43.0 3.70e-01 80.8% 75.8%
3275586 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 40.0 3.82e-01 74.0% 90.0%
4638999 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.58 42.0 4.12e-01 78.1% 95.0%
4927585 304.8.1.9 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.57 40.0 3.89e-01 74.0% 97.5%
4028351 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.57 40.0 3.53e-01 74.0% 74.5%
4025515 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 42.0 3.50e-01 80.8% 63.7%
3687672 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.56 43.0 3.52e-01 83.6% 93.6%
3575537 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 41.0 3.82e-01 80.8% 90.0%
4371656 304.8.1.5 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL 0.56 39.0 3.62e-01 74.0% 81.1%
3953369 304.4.1.2 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase 0.56 42.0 3.73e-01 82.2% 85.3%
4964337 3115.5.1.1 ↗ a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.55 38.0 4.24e-01 80.8% 98.2%
3581044 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.55 34.0 3.31e-01 74.0% 54.1%
4945049 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 46.0 4.24e-01 94.5% 92.6%
None — 0.55 40.0 3.43e-01 82.2% 63.7%
4931771 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.55 40.0 3.69e-01 80.8% 83.0%
4976988 304.8.1.9 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_6 0.54 42.0 4.01e-01 87.7% 98.9%
3268200 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 39.0 3.70e-01 79.5% 92.2%
3275821 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 39.0 3.82e-01 79.5% 96.2%
4027313 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.53 42.0 3.94e-01 90.4% 96.8%
3315719 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 39.0 3.72e-01 83.6% 95.6%
4026330 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.52 43.0 3.81e-01 100.0% 80.8%
3814696 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 44.0 3.90e-01 98.6% 80.0%
3480006 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 40.0 3.48e-01 89.0% 70.4%
3296704 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.51 43.0 3.43e-01 94.5% 99.3%
3454061 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 36.0 3.52e-01 75.3% 98.8%
3495471 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 39.0 3.59e-01 89.0% 85.7%
3252771 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.50 37.0 3.54e-01 79.5% 87.1%
3499634 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.50 42.0 3.60e-01 98.6% 69.2%