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AY133112.1__AAN12352.1__X__00050
Bact-VirAY133112.1__AAN12352.1__X__00050
Identity
- Accession:
- AY133112 ↗
- Kingdom:
- phage
Quality
94.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-56
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j09A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 54.0 | 4.13e-01 | 100.0% | 38.0% |
| 1nzjA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 53.0 | 3.92e-01 | 98.0% | 32.6% |
| 1q16A07 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.65 | 50.0 | 3.72e-01 | 85.7% | 93.0% |
| 1npyA01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.63 | 43.0 | 3.43e-01 | 87.8% | 35.0% |
| 1gcuA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.62 | 48.0 | 3.45e-01 | 85.7% | 49.3% |
| 2eggB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.61 | 43.0 | 3.06e-01 | 87.8% | 24.0% |
| 1ogyA03 | 3.40.228.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 | 0.61 | 51.0 | 3.20e-01 | 95.9% | 19.6% |
| 2npnA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.60 | 50.0 | 3.82e-01 | 100.0% | 39.5% |
| 4kv7A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 46.0 | 3.35e-01 | 100.0% | 28.0% |
| 1eljA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 44.0 | 3.03e-01 | 93.9% | 21.9% |
| 1y44A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.57 | 48.0 | 3.09e-01 | 100.0% | 17.9% |
| 7s6eA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 49.0 | 3.65e-01 | 100.0% | 37.3% |
| 6feaB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 44.0 | 3.31e-01 | 100.0% | 30.8% |
| 3hhfA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 40.0 | 3.19e-01 | 75.5% | 88.1% |
| 3jb9X01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 46.0 | 3.05e-01 | 98.0% | 21.0% |
| 6o9aA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 44.0 | 3.47e-01 | 98.0% | 38.1% |
| 3dnfA03 | 3.40.1010.20 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, catalytic domain | 0.57 | 44.0 | 3.57e-01 | 95.9% | 43.4% |
| 3hdvB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 42.0 | 3.25e-01 | 100.0% | 33.3% |
| 2hxrB00 | 3.40.190.290 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › | 0.56 | 48.0 | 3.23e-01 | 100.0% | 28.7% |
| 3u7qB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.55 | 42.0 | 3.19e-01 | 100.0% | 30.8% |
| 4q0cA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 44.0 | 3.18e-01 | 91.8% | 32.9% |
| 3aekA03 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 48.0 | 3.59e-01 | 100.0% | 91.9% |
| 1utbB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 41.0 | 3.14e-01 | 95.9% | 32.8% |
| 3pdiB01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 43.0 | 3.22e-01 | 100.0% | 31.7% |
| 1qvvA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.54 | 41.0 | 2.83e-01 | 95.9% | 77.4% |
| 1jetA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.54 | 45.0 | 3.02e-01 | 95.9% | 46.8% |
| 2xdqA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 44.0 | 3.31e-01 | 100.0% | 34.6% |
| 3ho7A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 38.0 | 3.06e-01 | 81.6% | 86.4% |
| 1evlA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.53 | 37.0 | 2.94e-01 | 81.6% | 30.4% |
| 2couA01 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.53 | 37.0 | 3.15e-01 | 89.8% | 40.4% |
| 5t5dA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.53 | 43.0 | 3.16e-01 | 95.9% | 31.3% |
| 1zbsA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 38.0 | 3.21e-01 | 81.6% | 72.9% |
| 3hdgA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 39.0 | 3.11e-01 | 100.0% | 35.5% |
| 4zylB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 42.0 | 3.04e-01 | 89.8% | 45.8% |
| 3fzvD02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 37.0 | 3.07e-01 | 98.0% | 37.6% |
| 5iaiA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 37.0 | 2.63e-01 | 98.0% | 21.4% |
| 4zs9A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 41.0 | 3.02e-01 | 100.0% | 59.1% |
| 3sqnB04 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 34.0 | 2.99e-01 | 83.7% | 39.8% |
| 2g8lA03 | 3.40.50.10880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein PF01937, DUF89, domain 3 | 0.51 | 40.0 | 3.04e-01 | 100.0% | 35.1% |
| 3kosA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 35.0 | 2.93e-01 | 89.8% | 36.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4970422 | 2005.1.1.5 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c | 0.70 | 54.0 | 3.57e-01 | 100.0% | 20.5% |
| 3739788 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.69 | 59.0 | 4.19e-01 | 100.0% | 31.5% |
| 4972122 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 53.0 | 3.59e-01 | 93.9% | 92.3% |
| 3605597 | 2007.1.2.27 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase | 0.64 | 53.0 | 3.87e-01 | 100.0% | 32.9% |
| 4951426 | 2007.1.14.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Oxidored_nitro | 0.63 | 53.0 | 3.78e-01 | 93.9% | 30.7% |
| 3997975 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.63 | 54.0 | 3.54e-01 | 100.0% | 21.7% |
| 4031448 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.62 | 49.0 | 3.27e-01 | 98.0% | 21.5% |
| 4033775 | 7523.1.1.30 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 | 0.62 | 50.0 | 3.13e-01 | 95.9% | 18.3% |
| 3290714 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.61 | 47.0 | 3.86e-01 | 95.9% | 44.0% |
| 3615680 | 2007.1.2.27 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_A-cyclase | 0.60 | 51.0 | 3.80e-01 | 100.0% | 36.2% |
| 1520223 | 7523.1.1.30 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 | 0.59 | 39.0 | 3.26e-01 | 91.8% | 35.4% |
| 3968244 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.57 | 47.0 | 3.75e-01 | 100.0% | 44.0% |
| 1756827 | 2004.1.1.186 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_12 | 0.57 | 46.0 | 3.04e-01 | 98.0% | 20.4% |
| 4135510 | 2007.1.5.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › ATC-like | 0.56 | 43.0 | 3.00e-01 | 85.7% | 27.9% |
| 4886650 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.56 | 38.0 | 3.24e-01 | 85.7% | 41.2% |
| 2523981 | 7568.1.1.0 ↗ | a/b three-layered sandwiches › BRCT domain › BRCT domain › BRCT domain | 0.55 | 41.0 | 3.27e-01 | 100.0% | 35.9% |
| 3974099 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.55 | 41.0 | 3.28e-01 | 93.9% | 37.4% |
| 4955230 | 232.1.1.2 ↗ | a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › ADI | 0.54 | 43.0 | 2.63e-01 | 93.9% | 51.3% |
| 1522913 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 41.0 | 3.43e-01 | 95.9% | 44.7% |
| 3907772 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.54 | 46.0 | 2.93e-01 | 100.0% | 17.9% |
| 3966875 | 7577.1.1.3 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5 | 0.54 | 45.0 | 2.78e-01 | 100.0% | 21.5% |
| 3590720 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.54 | 46.0 | 3.03e-01 | 100.0% | 63.6% |
| 3632207 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.54 | 44.0 | 3.78e-01 | 100.0% | 55.6% |
| 3218517 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.53 | 41.0 | 3.00e-01 | 100.0% | 27.4% |
| 3617415 | 2004.5.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › PF27109 | 0.52 | 42.0 | 3.01e-01 | 100.0% | 33.0% |
| 4948994 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.51 | 37.0 | 2.64e-01 | 100.0% | 21.5% |