Back to structures

AY216660.1__AAP49925.1__CPTT1_003__00003

Bact-Vir

AY216660.1__AAP49925.1__CPTT1_003__00003

Identity

Accession:
AY216660 ↗
Kingdom:
phage

Quality

89.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.66 50.0 3.27e-01 81.8% 81.1%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.65 49.0 4.53e-01 83.3% 95.5%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.64 56.0 3.87e-01 100.0% 35.5%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.71e-01 100.0% 100.0%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.64 49.0 3.87e-01 98.5% 39.4%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 53.0 4.02e-01 92.4% 96.3%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.64 49.0 4.00e-01 81.8% 53.8%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.63 47.0 4.30e-01 80.3% 100.0%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 55.0 5.56e-01 98.5% 98.5%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.62 47.0 3.07e-01 81.8% 95.3%
2qq6A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.62 45.0 3.83e-01 78.8% 100.0%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 48.0 3.03e-01 83.3% 88.1%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 50.0 4.60e-01 92.4% 95.5%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.61 44.0 4.61e-01 90.9% 83.6%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 41.0 4.15e-01 71.2% 100.0%
3ffvA00 3.40.1580.20 Alpha Beta › 3-Layer(aba) Sandwich › SMI1/KNR4-like › Syd protein 0.60 51.0 3.79e-01 97.0% 96.1%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.63e-01 98.5% 75.5%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.60 43.0 3.97e-01 75.8% 61.9%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.60 45.0 4.18e-01 80.3% 100.0%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 44.0 4.42e-01 78.8% 88.2%
6jt6A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.60 51.0 3.71e-01 98.5% 76.4%
1f1sA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.59 42.0 3.99e-01 75.8% 84.1%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 39.0 2.78e-01 87.9% 22.8%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 42.0 3.42e-01 87.9% 40.8%
1u9tA01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.59 43.0 3.39e-01 81.8% 75.9%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 52.0 3.36e-01 100.0% 27.3%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.99e-01 95.5% 75.0%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.57 44.0 3.92e-01 97.0% 56.4%
3cwxA00 3.40.1420.20 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Pathogenicity island component CagD 0.57 46.0 3.83e-01 90.9% 71.2%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.57 48.0 3.92e-01 97.0% 82.0%
2uzzA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.57 46.0 3.35e-01 89.4% 57.6%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.57 43.0 3.47e-01 84.8% 93.0%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.57 47.0 4.14e-01 95.5% 96.1%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.71e-01 90.9% 76.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.56 41.0 2.71e-01 81.8% 99.7%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.86e-01 92.4% 80.4%
3fveA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.55 38.0 3.17e-01 74.2% 75.2%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.67e-01 89.4% 86.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 41.0 2.78e-01 81.8% 23.7%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 40.0 2.70e-01 78.8% 94.4%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.56e-01 80.3% 86.0%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 39.0 2.63e-01 83.3% 19.3%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 45.0 3.78e-01 100.0% 60.5%
2x1cB01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 42.0 2.88e-01 90.9% 74.5%
4mf9B01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.53 39.0 3.08e-01 81.8% 75.8%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.53 44.0 3.95e-01 100.0% 78.4%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 45.0 4.13e-01 98.5% 77.8%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.52 42.0 3.82e-01 95.5% 63.3%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 39.0 2.67e-01 84.8% 22.1%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 35.0 3.04e-01 74.2% 52.5%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 40.0 2.85e-01 93.9% 36.8%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.50 41.0 3.64e-01 100.0% 66.1%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 40.0 3.02e-01 90.9% 89.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978624 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 60.0 4.87e-01 98.5% 49.2%
3588455 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 44.0 4.39e-01 77.3% 61.4%
3786102 4026.1.1.2 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Bud3_N 0.67 51.0 3.71e-01 83.3% 65.3%
3870514 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.66 50.0 4.16e-01 81.8% 66.1%
3264341 5.1.4.147 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.64 48.0 3.08e-01 80.3% 61.5%
3512735 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 49.0 3.41e-01 83.3% 64.4%
4463778 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.64 41.0 3.37e-01 87.9% 35.8%
5011877 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.64 46.0 4.18e-01 77.3% 97.8%
3323191 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 40.0 3.92e-01 74.2% 57.3%
3427234 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.63 56.0 3.78e-01 100.0% 33.9%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 46.0 4.90e-01 100.0% 96.4%
3436491 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.62 47.0 3.60e-01 83.3% 46.3%
3480535 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 49.0 4.21e-01 86.4% 70.5%
4890150 5.1.4.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APH-like_N 0.62 46.0 3.06e-01 83.3% 91.1%
5029671 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.62 47.0 3.60e-01 83.3% 36.9%
3290662 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 52.0 4.28e-01 98.5% 50.8%
3249490 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.62 46.0 3.94e-01 83.3% 67.8%
3929729 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 47.0 3.42e-01 84.8% 73.3%
3805925 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.61 46.0 2.98e-01 81.8% 38.1%
4627221 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.61 45.0 4.61e-01 97.0% 83.1%
3880816 10.1.1.8 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY 0.61 54.0 4.00e-01 100.0% 60.6%
3263647 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.83e-01 83.3% 61.7%
5013176 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.60 47.0 4.53e-01 84.8% 98.7%
3925491 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 46.0 3.22e-01 83.3% 66.4%
3923314 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 46.0 3.13e-01 83.3% 44.5%
3234981 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.60 47.0 3.37e-01 87.9% 66.2%
3839277 241.16.1.1 a+b two layers › Type III secretory system chaperone-like › protein CagD › protein CagD › CagD 0.58 47.0 3.73e-01 90.9% 65.5%
3458192 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.58 47.0 3.03e-01 89.4% 96.1%
4478186 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 37.0 4.29e-01 83.3% 100.0%
3998402 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 47.0 4.27e-01 95.5% 86.2%
3247178 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 44.0 4.26e-01 92.4% 86.3%
3238369 12.1.1.88 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5386 0.56 38.0 4.09e-01 72.7% 88.7%
3926623 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 45.0 4.41e-01 97.0% 89.0%
3621408 5.1.4.74 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.55 45.0 2.93e-01 90.9% 84.0%
3625965 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 45.0 4.08e-01 93.9% 82.1%
1924009 227.1.1.10 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Herpes_PAP 0.55 42.0 3.33e-01 81.8% 44.4%
3244934 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 45.0 2.96e-01 93.9% 22.5%
4232371 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 37.0 3.09e-01 83.3% 39.2%
2324014 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 46.0 3.43e-01 98.5% 77.1%
3277345 7512.1.1.4 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_10 0.54 46.0 2.86e-01 98.5% 29.6%
3622643 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 44.0 4.18e-01 95.5% 85.9%
3743106 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 42.0 3.23e-01 83.3% 47.6%
3940997 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.77e-01 100.0% 60.7%
3485287 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 46.0 3.35e-01 100.0% 49.3%
3558235 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 41.0 3.28e-01 83.3% 43.7%
3440815 5.1.11.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.54 45.0 2.87e-01 93.9% 95.3%
3507499 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 41.0 3.27e-01 83.3% 49.6%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.54 42.0 3.36e-01 83.3% 44.8%
3791839 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.53 45.0 4.28e-01 97.0% 87.5%
3230771 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.53 43.0 3.97e-01 93.9% 80.0%
4646871 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.53 40.0 3.23e-01 84.8% 42.4%
3725759 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 41.0 3.07e-01 84.8% 53.8%
3971167 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 39.0 2.82e-01 81.8% 60.0%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 40.0 3.20e-01 83.3% 45.9%
3906665 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 44.0 3.20e-01 95.5% 64.1%
3625037 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 40.0 3.19e-01 83.3% 45.9%
3519579 295.1.1.20 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.52 41.0 3.93e-01 89.4% 73.8%
3964837 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.52 39.0 3.82e-01 83.3% 78.7%
5081724 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 40.0 2.90e-01 84.8% 76.0%
3507415 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 44.0 3.25e-01 98.5% 73.2%
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.51 41.0 3.90e-01 92.4% 87.5%
4939066 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.51 40.0 3.21e-01 84.8% 43.4%
3404445 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 44.0 3.37e-01 100.0% 78.8%
3254772 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 40.0 2.89e-01 87.9% 76.3%
3251867 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.51 40.0 3.19e-01 84.8% 46.2%