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AY236756.1__AAP74506.1__X__00006

Bact-Vir

AY236756.1__AAP74506.1__X__00006

Identity

Accession:
AY236756 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fkiA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.69 49.0 4.21e-01 74.3% 86.4%
2i8dA01 3.90.1150.200 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.68 48.0 4.68e-01 78.4% 67.9%
1hyrC01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.67 59.0 4.51e-01 100.0% 51.7%
3qmfA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.67 45.0 3.71e-01 70.3% 58.2%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 59.0 4.44e-01 100.0% 53.9%
1b7yB05 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 47.0 3.46e-01 74.3% 38.2%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 56.0 4.36e-01 100.0% 55.5%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 56.0 4.25e-01 100.0% 50.0%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 57.0 4.41e-01 100.0% 48.2%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 56.0 4.33e-01 100.0% 52.0%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 56.0 4.24e-01 100.0% 50.3%
1k8iB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.63 48.0 4.56e-01 83.8% 80.2%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.63 55.0 4.17e-01 98.6% 53.9%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.63 42.0 4.20e-01 94.6% 67.1%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.63 53.0 3.95e-01 95.9% 87.9%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 48.0 3.67e-01 83.8% 39.4%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 54.0 4.08e-01 98.6% 51.7%
1fneA01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.61 46.0 4.56e-01 83.8% 75.9%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.82e-01 87.8% 92.1%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 52.0 4.03e-01 100.0% 55.0%
1a6aB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.60 46.0 4.36e-01 83.8% 76.4%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.60 52.0 4.14e-01 100.0% 53.2%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 50.0 3.93e-01 94.6% 78.6%
4d8pB01 3.10.320.10 Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 0.59 51.0 4.65e-01 100.0% 77.5%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 50.0 4.12e-01 100.0% 90.7%
2od0A00 3.30.1460.30 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › YgaC/TfoX-N like chaperone 0.57 43.0 3.93e-01 82.4% 89.3%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 45.0 4.39e-01 91.9% 91.9%
6n59A02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.73e-01 94.6% 65.5%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.55 40.0 4.23e-01 77.0% 95.4%
3d79A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.54 37.0 3.74e-01 71.6% 94.6%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 41.0 3.28e-01 85.1% 39.9%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 47.0 4.31e-01 100.0% 87.9%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.53 39.0 3.13e-01 81.1% 97.5%
4ywrA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 47.0 3.30e-01 98.6% 91.2%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.52 35.0 3.10e-01 70.3% 83.1%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 41.0 3.99e-01 100.0% 76.5%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 34.0 3.06e-01 98.6% 45.1%
6ywnA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 45.0 3.96e-01 98.6% 80.6%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 37.0 2.80e-01 79.7% 64.0%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 40.0 3.86e-01 100.0% 76.2%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.64e-01 87.8% 70.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589304 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.89 81.0 8.12e-01 95.9% 98.7%
4934918 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.77 55.0 5.71e-01 94.6% 80.0%
4978994 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.69 49.0 4.34e-01 74.3% 94.3%
3667954 211.1.1.51 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyco_transf_20 0.69 38.0 3.14e-01 97.3% 30.0%
5035266 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.67 57.0 5.52e-01 94.6% 89.2%
1150630 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.67 47.0 4.04e-01 74.3% 75.0%
3279474 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.66 50.0 4.29e-01 79.7% 96.5%
4999340 241.11.1.6 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › TfoX_N 0.66 47.0 4.23e-01 74.3% 94.0%
3747736 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.65 52.0 5.16e-01 93.2% 82.5%
5022991 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 52.0 4.94e-01 93.2% 73.3%
3284412 241.11.1.6 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › TfoX_N 0.65 46.0 4.10e-01 74.3% 96.2%
3280585 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.64 50.0 4.38e-01 83.8% 84.5%
3287429 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.63 49.0 4.40e-01 83.8% 86.7%
3285274 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.63 48.0 4.19e-01 82.4% 85.2%
3960569 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.63 53.0 4.92e-01 93.2% 77.9%
4974156 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.63 49.0 4.45e-01 83.8% 91.0%
5059446 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.61 46.0 4.25e-01 82.4% 93.0%
5005203 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.61 45.0 4.40e-01 77.0% 83.7%
4931934 241.9.1.0 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.61 52.0 4.64e-01 94.6% 79.0%
5025174 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.61 45.0 4.63e-01 78.4% 94.3%
4304648 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.61 48.0 4.44e-01 85.1% 80.0%
3961944 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.60 47.0 4.25e-01 83.8% 92.0%
3881032 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.60 52.0 3.95e-01 98.6% 53.5%
4031639 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.60 49.0 4.61e-01 89.2% 83.3%
3917386 233.1.1.1 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.60 51.0 4.00e-01 100.0% 54.9%
4936682 243.6.1.8 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › AF_0587-like_pre-PUA 0.60 44.0 4.23e-01 78.4% 83.5%
5036746 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.22e-01 89.2% 35.8%
4954638 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.59 50.0 4.35e-01 94.6% 71.1%
3536727 9.15.1.0 beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 0.59 51.0 3.96e-01 94.6% 71.2%
3677732 7512.1.1.6 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.59 42.0 2.60e-01 77.0% 59.8%
3839444 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.59 51.0 4.32e-01 95.9% 70.0%
5041419 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.59 44.0 4.34e-01 81.1% 86.3%
3288945 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.58 49.0 4.45e-01 95.9% 67.6%
4165617 865.1.1.0 beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain 0.58 52.0 4.38e-01 100.0% 85.6%
3604572 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.58 40.0 4.08e-01 71.6% 95.7%
3846350 233.1.1.3 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_alpha 0.58 44.0 4.45e-01 82.4% 81.3%
4200177 3894.1.1.3 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.57 46.0 3.84e-01 100.0% 50.0%
5030621 241.9.1.2 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF5655 0.57 49.0 4.32e-01 95.9% 67.3%
4378012 241.7.1.1 a+b two layers › Type III secretory system chaperone-like › YgaC/TfoX-N like › YgaC/TfoX-N like › TfoX_N 0.57 43.0 3.86e-01 82.4% 87.6%
2631766 3894.1.1.1 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.56 42.0 3.65e-01 95.9% 48.4%
2162624 3894.1.1.1 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.56 42.0 3.63e-01 94.6% 48.4%
4981692 241.11.1.6 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › TfoX_N 0.56 43.0 3.86e-01 83.8% 83.8%
1780243 3894.1.1.3 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfB_M 0.55 46.0 3.21e-01 93.2% 77.4%
4033928 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.54 45.0 3.87e-01 95.9% 60.8%
4958446 241.9.1.0 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like 0.54 49.0 4.15e-01 100.0% 69.2%
4959522 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.54 45.0 3.91e-01 95.9% 60.8%
4979253 241.9.1.1 a+b two layers › Type III secretory system chaperone-like › YdhG-like › YdhG-like › DUF1801 0.53 44.0 3.95e-01 95.9% 66.4%
3845957 389.1.1.1 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF 0.53 29.0 3.41e-01 74.3% 78.0%
3388925 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.52 37.0 3.42e-01 86.5% 57.9%
3823655 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.52 44.0 2.79e-01 97.3% 64.6%
5065809 3518.1.1.1 a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind 0.52 43.0 3.53e-01 100.0% 60.0%
5061619 1075.1.1.3 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_2 0.52 36.0 2.52e-01 74.3% 63.2%
3811555 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.52 43.0 2.78e-01 97.3% 62.5%
3648162 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.51 40.0 2.56e-01 86.5% 24.1%
3512465 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.51 43.0 3.64e-01 91.9% 95.8%
3508084 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.51 40.0 3.88e-01 85.1% 96.5%
3964807 9.7.1.2 beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › PF28291 0.51 45.0 4.14e-01 98.6% 100.0%
3292430 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.50 41.0 2.66e-01 95.9% 56.7%
3293660 2003.1.5.31 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS 0.50 43.0 2.77e-01 98.6% 59.0%