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AY236756.1__AAP74508.1__X__00008

Bact-Vir

AY236756.1__AAP74508.1__X__00008

Identity

Accession:
AY236756 ↗
Kingdom:
phage

Quality

75.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-76
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.73 62.0 5.56e-01 94.2% 75.0%
1iftA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.73 54.0 4.02e-01 79.7% 60.3%
4emyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.70 48.0 3.58e-01 98.6% 28.8%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.70 60.0 5.03e-01 100.0% 61.9%
3ktzA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.69 53.0 3.97e-01 82.6% 60.1%
1nioA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.66 51.0 3.89e-01 84.1% 61.1%
7uclA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 48.0 4.25e-01 78.3% 99.0%
4za3A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.66 51.0 3.87e-01 84.1% 60.7%
7by6B04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 61.0 4.11e-01 100.0% 63.2%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.65 55.0 4.60e-01 91.3% 81.0%
3juwA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 52.0 4.02e-01 94.2% 71.9%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.63 46.0 4.47e-01 79.7% 80.8%
2dt9A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 47.0 4.50e-01 100.0% 70.9%
1svvB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 43.0 3.97e-01 98.6% 57.6%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 47.0 4.72e-01 100.0% 87.5%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.60 42.0 2.65e-01 75.4% 20.6%
3l9rA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 50.0 3.83e-01 100.0% 50.9%
4gtwB02 3.40.570.10 Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A 0.58 51.0 3.40e-01 100.0% 83.3%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.57 41.0 3.04e-01 76.8% 89.0%
4h0aA00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.57 45.0 3.06e-01 89.9% 87.0%
3kkiA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 42.0 3.34e-01 100.0% 37.0%
1sqhA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 48.0 3.98e-01 98.6% 94.7%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.67e-01 84.1% 94.0%
1cw1A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.56 39.0 2.45e-01 73.9% 85.1%
1o7dD01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 39.0 2.69e-01 73.9% 49.4%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 3.99e-01 84.1% 92.9%
1ilyA00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.55 41.0 3.78e-01 79.7% 95.6%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 48.0 4.08e-01 100.0% 59.6%
1f49A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 46.0 3.16e-01 100.0% 82.4%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 37.0 3.67e-01 71.0% 91.9%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.55 37.0 2.89e-01 72.5% 80.9%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 37.0 2.41e-01 71.0% 25.1%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 39.0 3.27e-01 79.7% 46.7%
5c68A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 37.0 3.26e-01 71.0% 53.2%
3etvA02 1.20.58.2230 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Retrograde transport protein Dsl1, N-terminal domain 0.54 40.0 2.73e-01 78.3% 30.3%
2czrA01 3.40.1350.70 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › TBP-interacting protein, N-terminal domain 0.53 44.0 3.96e-01 98.6% 80.2%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.53 37.0 2.35e-01 76.8% 21.7%
6ovnB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.66e-01 91.3% 64.1%
1t7pA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.52 40.0 3.13e-01 84.1% 40.8%
2iqiB00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.52 41.0 3.11e-01 87.0% 64.3%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 39.0 2.43e-01 85.5% 98.0%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 41.0 3.00e-01 100.0% 68.3%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.84e-01 98.6% 98.7%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4323155 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.75 68.0 5.96e-01 100.0% 77.0%
3476001 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.74 66.0 5.99e-01 100.0% 84.9%
5035266 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.74 65.0 6.16e-01 100.0% 90.4%
3252404 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.73 65.0 5.88e-01 100.0% 82.1%
3885751 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.73 62.0 5.66e-01 97.1% 81.1%
3624211 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.73 60.0 4.50e-01 89.9% 46.7%
3451705 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.72 64.0 5.09e-01 100.0% 57.1%
3368463 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.71 62.0 5.11e-01 100.0% 60.0%
3995113 331.4.1.1 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1 0.71 62.0 5.58e-01 98.6% 84.2%
4465073 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.71 62.0 5.49e-01 100.0% 74.0%
3509038 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.70 61.0 5.44e-01 100.0% 76.0%
3257782 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 47.0 4.34e-01 72.5% 91.0%
4117857 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.67 57.0 5.08e-01 100.0% 74.3%
4012530 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.66 46.0 3.18e-01 72.5% 27.0%
5072901 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.65 55.0 5.35e-01 100.0% 85.0%
4093191 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.65 55.0 4.95e-01 100.0% 73.1%
3332764 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 53.0 5.07e-01 98.6% 82.4%
4178706 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.63 52.0 4.74e-01 100.0% 69.5%
4998670 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 54.0 5.01e-01 100.0% 80.0%
4059895 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.62 46.0 4.92e-01 95.7% 90.0%
5057340 3012.1.1.0 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain 0.62 42.0 4.00e-01 100.0% 58.8%
4128787 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.61 46.0 4.89e-01 97.1% 91.7%
3708662 314.1.1.1 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.61 56.0 3.42e-01 100.0% 30.3%
3467049 314.1.1.1 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.61 56.0 3.93e-01 100.0% 58.1%
4123723 4099.1.1.10 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med1 0.61 53.0 4.67e-01 97.1% 77.0%
3966622 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.60 44.0 3.07e-01 79.7% 51.2%
5007802 331.4.1.36 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27851 0.60 52.0 5.01e-01 100.0% 87.5%
4442448 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.60 45.0 4.75e-01 97.1% 91.7%
4285697 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.60 44.0 4.72e-01 95.7% 91.5%
4031020 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.60 41.0 2.62e-01 71.0% 50.6%
4459482 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.59 43.0 3.08e-01 78.3% 33.5%
4414890 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.59 45.0 4.81e-01 95.7% 95.0%
4669316 3439.1.1.0 a+b two layers › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain › PafA/Dop C-terminal domain 0.59 46.0 4.72e-01 92.8% 87.7%
6336 331.13.1.1 a+b two layers › TBP-like › YwmB-like › YwmB-like › DUF1779 0.59 47.0 3.54e-01 95.7% 42.0%
3672898 295.1.1.3 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.59 42.0 3.62e-01 79.7% 96.8%
3781478 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 45.0 4.03e-01 87.0% 90.5%
3987265 12.3.1.29 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_3 0.58 50.0 3.37e-01 100.0% 71.2%
4928574 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.58 46.0 4.24e-01 85.5% 90.9%
3934099 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.57 51.0 4.68e-01 100.0% 83.3%
3412674 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 48.0 4.40e-01 94.2% 92.2%
4065140 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 38.0 2.63e-01 71.0% 37.1%
4956062 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.56 45.0 3.75e-01 100.0% 48.8%
5038175 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.55 49.0 4.67e-01 100.0% 85.0%
3188595 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.55 39.0 2.93e-01 72.5% 28.3%
5022929 873.1.1.1 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.55 42.0 3.33e-01 82.6% 54.5%
4338928 233.1.1.6 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_3 0.55 40.0 3.74e-01 79.7% 68.9%
3605683 3609.1.1.0 alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain 0.55 37.0 3.67e-01 97.1% 65.3%
5001118 2004.1.1.16 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf 0.55 40.0 3.07e-01 78.3% 56.4%
3624441 4.1.1.24 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.55 40.0 3.26e-01 79.7% 54.3%
5017022 331.1.1.27 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CBS 0.55 45.0 3.10e-01 98.6% 25.3%
4930769 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 47.0 4.13e-01 98.6% 89.5%
5022458 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 45.0 3.67e-01 100.0% 49.2%
2550761 12.3.1.29 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_3 0.54 42.0 2.86e-01 89.9% 97.2%
3450849 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.53 41.0 3.49e-01 87.0% 93.3%
11049 2008.4.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › TBP-interacting protein N-terminal domain-like › TBP-interacting protein N-terminal domain-like › TBPIP_N 0.53 44.0 4.03e-01 98.6% 85.0%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 44.0 3.66e-01 100.0% 88.1%
3412380 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.52 40.0 2.72e-01 87.0% 84.9%
3824511 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.52 41.0 3.45e-01 87.0% 95.0%
4939844 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.51 39.0 3.92e-01 85.5% 98.6%
4539347 375.1.1.15 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.51 40.0 3.69e-01 92.8% 77.0%
3572186 12.3.1.13 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.51 38.0 2.66e-01 87.0% 86.2%
4963899 2008.1.1.229 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF7116 0.51 42.0 3.78e-01 100.0% 94.5%
3910828 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.50 42.0 3.46e-01 100.0% 51.4%
3812622 5.1.4.404 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_IP5PC_F 0.50 41.0 2.55e-01 89.9% 34.2%