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AY283928.2__AAQ64273.1__KVP40.0204__00202

Bact-Vir

AY283928.2__AAQ64273.1__KVP40.0204__00202

Identity

Accession:
AY283928 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Schizotequatrovirus› Vibrio_phage_KVP40

TaxID: 75320

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-88
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 41.0 4.49e-01 100.0% 84.2%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.59 49.0 4.80e-01 100.0% 83.8%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 4.12e-01 100.0% 67.5%
6n9aB02 3.30.420.200 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.56 39.0 3.90e-01 82.6% 72.5%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.55 44.0 3.83e-01 89.9% 97.2%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.72e-01 100.0% 59.7%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 38.0 4.16e-01 98.6% 94.6%
5aigA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.46e-01 89.9% 78.2%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.44e-01 89.9% 75.4%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.32e-01 89.9% 73.6%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.43e-01 89.9% 48.1%
3g0kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 40.0 3.35e-01 88.4% 67.2%
3azoA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 39.0 2.66e-01 85.5% 22.3%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.51 38.0 3.21e-01 82.6% 46.4%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.50 39.0 3.07e-01 94.2% 37.2%
3k50A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 40.0 3.57e-01 94.2% 61.0%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3991019 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.68 46.0 4.80e-01 89.9% 75.4%
3594849 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 57.0 4.36e-01 95.7% 66.9%
3575208 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.62 37.0 3.04e-01 87.0% 31.0%
4804226 9.1.1.11 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.61 33.0 3.35e-01 73.9% 51.5%
3354076 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.60 48.0 3.94e-01 100.0% 46.9%
3612838 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 49.0 4.50e-01 91.3% 85.6%
3935507 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.45e-01 100.0% 65.0%
3624338 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.41e-01 100.0% 97.3%
3622278 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.58 44.0 3.26e-01 84.1% 72.4%
4929508 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 4.02e-01 94.2% 65.6%
4943890 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 3.97e-01 95.7% 62.2%
5048438 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.56 48.0 3.86e-01 95.7% 62.2%
3732616 211.1.1.6 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 0.55 35.0 2.68e-01 87.0% 26.1%
5075037 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.55 43.0 3.38e-01 85.5% 58.7%
4501226 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.55 40.0 4.12e-01 94.2% 84.6%
3383095 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 44.0 3.00e-01 89.9% 35.5%
3932007 7579.1.1.35 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PGAP1 0.54 40.0 2.72e-01 82.6% 32.1%
3592867 5.1.4.421 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st, Beta-prop_IFT140_2nd 0.53 42.0 2.41e-01 89.9% 8.7%
3449212 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 43.0 3.01e-01 89.9% 29.4%
3501936 5104.1.1.2 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45 0.52 38.0 3.51e-01 79.7% 77.9%
3961713 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.52 42.0 4.28e-01 95.7% 100.0%
3456358 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.67e-01 94.2% 62.0%
4932115 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.25e-01 89.9% 79.9%