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AY320035.2AAR29696.1X__00007

Bact-Vir

AY320035.2__AAR29696.1__X__00007

Identity

Accession:: AY320035 ↗
Kingdom:: phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Veewebvirus› Streptomyces_phage_VWB

TaxID: 10702

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-103

PDB

Domain cluster: representative

CATH (25)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3d3bJ00	3.30.70.600	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10	0.69	35.0	3.83e-01	77.5%	57.5%
6julA02	3.30.1490.100	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain	0.61	39.0	4.08e-01	100.0%	69.8%
3ibwA00	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.60	44.0	4.95e-01	92.2%	97.5%
2cyyA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.56	40.0	4.14e-01	94.1%	78.9%
2jsxA01	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.56	38.0	4.41e-01	90.2%	100.0%
2djwA01	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.55	38.0	4.42e-01	92.2%	98.6%
3ui3A02	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.55	44.0	4.51e-01	97.1%	88.8%
4clfA02	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.55	49.0	3.99e-01	97.1%	90.8%
2zbcA01	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.54	37.0	4.32e-01	91.2%	100.0%
2pz4A01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	26.0	2.45e-01	100.0%	33.6%
1gtdA00	3.30.1280.10	Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS	0.54	40.0	4.42e-01	95.1%	100.0%
1lxjA00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.54	39.0	3.92e-01	97.1%	75.7%
2p5vA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.54	38.0	4.18e-01	92.2%	90.5%
4pcqA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.53	38.0	4.16e-01	93.1%	90.5%
1yqhA00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	39.0	3.88e-01	97.1%	74.0%
2dbbA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.53	39.0	4.03e-01	95.1%	83.9%
2efpA02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.52	38.0	3.93e-01	95.1%	79.6%
1vk8A00	3.30.70.930	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.52	38.0	3.96e-01	97.1%	83.9%
2cuwA00	3.30.1280.10	Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS	0.52	39.0	4.25e-01	95.1%	97.6%
2cg4A02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.52	37.0	4.03e-01	92.2%	89.3%
2ia0B02	3.30.70.920	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain	0.52	39.0	3.97e-01	94.1%	80.8%
4indA01	2.60.120.1320	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	36.0	3.26e-01	97.1%	52.1%
1vq3B00	3.30.1280.10	Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS	0.51	37.0	4.03e-01	92.2%	94.0%
1o51A00	3.30.70.120	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	40.0	4.23e-01	95.1%	97.8%
1t4aA00	3.30.1280.10	Alpha Beta › 2-Layer Sandwich › Mth169; Chain: A , › Phosphoribosylformylglycinamidine synthase subunit PurS	0.50	37.0	4.09e-01	93.1%	100.0%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3918163	304.20.1.1 ↗	a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP_RNA-bind	0.65	36.0	3.21e-01	89.2%	38.6%
3969661	304.8.1.103 ↗	a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26954	0.59	44.0	4.83e-01	95.1%	94.1%
4979727	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.58	40.0	4.41e-01	95.1%	87.1%
4963330	304.4.1.1 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg	0.58	41.0	4.59e-01	94.1%	93.8%
5072796	304.4.1.0 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel	0.56	40.0	4.44e-01	95.1%	93.8%
4933008	304.4.1.1 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg	0.56	40.0	4.32e-01	95.1%	88.2%
3776688	304.48.1.4 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc	0.56	50.0	3.82e-01	97.1%	62.2%
5043890	304.4.1.1 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg	0.55	40.0	4.36e-01	96.1%	90.6%
4407603	304.28.1.23 ↗	a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › TRA2_N	0.54	46.0	3.85e-01	94.1%	88.1%
4941949	304.100.1.1 ↗	a+b two layers › Alpha-beta plaits › PurS-like › PurS-like › PurS	0.54	39.0	4.37e-01	91.2%	97.5%
5063945	304.100.1.0 ↗	a+b two layers › Alpha-beta plaits › PurS-like › PurS-like	0.54	40.0	4.42e-01	94.1%	100.0%
3188760	323.1.1.0 ↗	a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases	0.53	42.0	3.02e-01	86.3%	88.9%
4975915	304.4.1.29 ↗	a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg_3	0.52	40.0	4.23e-01	95.1%	92.2%
4982347	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	34.0	3.34e-01	100.0%	61.8%
4938175	4070.1.1.0 ↗	alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like	0.51	41.0	3.34e-01	85.3%	84.2%
4033553	304.26.1.1 ↗	a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP	0.51	39.0	3.90e-01	97.1%	80.0%
5039774	2003.1.2.0 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain	0.50	40.0	2.84e-01	89.2%	51.0%

D2 medium residues 112-161

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1zunA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.56	45.0	3.12e-01	94.0%	97.9%
2f8lA02	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.54	44.0	2.93e-01	98.0%	40.2%
7zhgO01	1.10.8.50	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.53	39.0	3.61e-01	84.0%	60.6%
6ve6A01	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.50	38.0	2.56e-01	90.0%	71.5%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3861452	386.1.1.392 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › C2H2_ASCIZ_4th	0.67	42.0	4.79e-01	70.0%	91.4%