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AY320035.2__AAR29712.1__X__00023

Bact-Vir

AY320035.2__AAR29712.1__X__00023

Identity

Accession:
AY320035 ↗
Kingdom:
phage

Quality

85.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-108
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.67 60.0 5.67e-01 100.0% 85.1%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.67 46.0 3.40e-01 73.1% 87.7%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.66 57.0 4.62e-01 100.0% 50.0%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.66 47.0 3.59e-01 74.4% 93.3%
4ymuD00 1.10.3720.10 Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like 0.66 45.0 3.32e-01 71.8% 48.8%
3ecsC01 1.20.120.1070 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain 0.66 57.0 5.33e-01 100.0% 78.0%
1ux8A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 48.0 4.20e-01 79.5% 91.5%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.64 49.0 3.94e-01 80.8% 84.0%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.64 49.0 4.96e-01 100.0% 84.6%
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.63 45.0 3.79e-01 76.9% 86.3%
1e3pA02 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.62 46.0 4.58e-01 80.8% 89.2%
6o0aA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 47.0 3.84e-01 83.3% 85.2%
8amqA02 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.61 45.0 2.95e-01 80.8% 69.4%
3p01A01 6.10.140.590 Special › Helix non-globular › Helix Hairpins › 0.60 44.0 4.39e-01 80.8% 74.7%
1chmA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.60 51.0 3.73e-01 100.0% 85.4%
3gwlA00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.60 53.0 4.82e-01 100.0% 77.4%
4k90A02 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.60 53.0 4.01e-01 100.0% 58.5%
4b4yA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 42.0 3.47e-01 75.6% 90.6%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.59 47.0 3.51e-01 89.7% 47.5%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 44.0 3.18e-01 88.5% 27.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.59 41.0 3.89e-01 74.4% 95.9%
2hyjA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 45.0 3.70e-01 83.3% 57.1%
7dl9B02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.59 51.0 3.83e-01 100.0% 89.2%
2iw2A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.59 50.0 3.47e-01 100.0% 49.5%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 50.0 4.86e-01 98.7% 93.1%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.57 49.0 3.33e-01 100.0% 53.0%
4nt1A00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.57 45.0 3.47e-01 91.0% 63.5%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 45.0 3.40e-01 100.0% 35.4%
1wn1A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.56 49.0 3.55e-01 100.0% 46.7%
4gc0A02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.56 46.0 3.48e-01 98.7% 82.3%
3sqnA02 1.10.1790.40 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › 0.55 38.0 3.35e-01 71.8% 76.3%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.55 44.0 3.99e-01 91.0% 72.6%
2gwcA00 3.30.590.20 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › 0.55 45.0 2.87e-01 94.9% 82.9%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 4.18e-01 100.0% 84.8%
4m0mA04 1.20.1270.440 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 39.0 3.56e-01 80.8% 59.0%
5af7B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 38.0 3.21e-01 76.9% 75.0%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 46.0 4.24e-01 98.7% 81.6%
2yyiA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.53 38.0 2.93e-01 78.2% 41.7%
2g3kA00 1.20.120.1130 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain 0.53 45.0 4.27e-01 96.2% 81.9%
1hr6B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 46.0 3.46e-01 100.0% 74.5%
3d3oA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 40.0 3.14e-01 83.3% 91.5%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.52 44.0 4.25e-01 100.0% 93.6%
2i10B02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 42.0 3.78e-01 100.0% 84.0%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.51 43.0 4.08e-01 100.0% 84.7%
4x28A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.51 36.0 3.01e-01 78.2% 77.0%
1zzpA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.50 41.0 3.79e-01 96.2% 89.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4177832 621.1.1.2 alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Smg8_Smg9 0.70 53.0 5.02e-01 82.1% 84.2%
3475327 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.69 54.0 5.39e-01 100.0% 83.7%
3491328 101.6.1.0 alpha arrays › HTH › Protein serine/threonine phosphatase 2C-C › Protein serine/threonine phosphatase 2C-C 0.68 50.0 5.06e-01 83.3% 78.2%
3477419 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 49.0 4.07e-01 76.9% 62.2%
3933570 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.67 50.0 4.60e-01 97.4% 62.0%
5049207 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 49.0 5.24e-01 92.3% 98.5%
3954639 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.47e-01 100.0% 100.0%
4512923 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.64 55.0 5.38e-01 96.2% 89.4%
5042713 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.64 56.0 5.50e-01 100.0% 90.6%
3743932 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 51.0 5.12e-01 97.4% 87.5%
3411777 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.64 53.0 5.06e-01 91.0% 78.9%
3597447 5076.1.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier 0.63 43.0 2.91e-01 70.5% 32.9%
3702774 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 51.0 3.75e-01 91.0% 33.6%
4957898 191.1.1.63 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N 0.63 47.0 3.55e-01 82.1% 38.5%
3472168 101.1.2.147 alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.62 54.0 4.58e-01 100.0% 80.0%
3608942 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 51.0 4.54e-01 89.7% 67.3%
3396075 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.62 52.0 5.21e-01 100.0% 95.0%
4973028 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.78e-01 88.5% 83.7%
4520167 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.61 50.0 4.70e-01 92.3% 74.7%
3939789 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.61 53.0 5.25e-01 100.0% 96.5%
3700991 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 52.0 4.75e-01 100.0% 72.4%
4592728 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.61 47.0 4.56e-01 87.2% 86.7%
3476551 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.60 50.0 3.71e-01 92.3% 73.7%
3961960 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.60 43.0 4.20e-01 78.2% 88.9%
3807852 109.4.1.120 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 0.60 42.0 3.15e-01 88.5% 29.0%
5060807 141.1.1.2 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › SQS_PSY 0.60 52.0 3.87e-01 100.0% 80.0%
4947397 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.59 45.0 3.39e-01 84.6% 40.9%
3657247 101.1.2.401 alpha arrays › HTH › HTH › winged helix domain › WH_GTF3C1_N 0.59 47.0 4.35e-01 89.7% 91.4%
55657 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.59 42.0 4.00e-01 74.4% 92.2%
3868 4204.1.1.1 alpha bundles › AF0941-like › AF0941-like › AF0941-like › AF0941-like 0.59 46.0 4.14e-01 85.9% 74.8%
3715472 2004.1.1.184 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11 0.58 44.0 2.59e-01 83.3% 53.8%
4991029 3896.1.1.0 alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.57 48.0 3.64e-01 100.0% 37.1%
4982553 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.56 47.0 4.33e-01 94.9% 73.3%
3551714 592.6.1.2 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › PF26582 0.56 39.0 3.62e-01 85.9% 56.2%
3605793 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.55 40.0 4.06e-01 79.5% 81.3%
3352955 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 38.0 2.86e-01 78.2% 27.3%
5049515 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.55 47.0 4.25e-01 100.0% 80.9%
4927328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 4.47e-01 98.7% 84.2%
3740593 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 44.0 3.42e-01 96.2% 38.4%
3950977 5058.1.1.9 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Colicin_V 0.53 46.0 3.74e-01 100.0% 77.4%
54722 601.28.1.0 alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.53 44.0 4.22e-01 96.2% 81.9%
3617829 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 39.0 3.44e-01 82.1% 88.0%
3284944 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.52 44.0 3.72e-01 100.0% 81.4%
3792888 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 39.0 3.26e-01 80.8% 80.0%
3844467 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.52 43.0 4.12e-01 92.3% 85.6%
3973013 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 39.0 2.66e-01 84.6% 23.3%
3935402 197.1.1.0 alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like 0.51 41.0 3.74e-01 96.2% 62.5%
3222099 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 37.0 3.06e-01 80.8% 41.3%