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AY320035.2__AAR29743.1__X__00056
Bact-VirAY320035.2__AAR29743.1__X__00056
Identity
- Accession:
- AY320035 ↗
- Kingdom:
- phage
Quality
97.2
mean pLDDT
Taxonomy
TaxID: 10702
Cluster
View cluster (32 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-13_80-212
Domain cluster:
rep: aot2015-NO08_SRR1761682_USA_scaffold_2_curated_prodigal-single.1__X__X__00245__D4-169
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13419.13 best | HAD_2 | 32.7 | 1.00e-07 | 74.8% | 56.2% |
| PF00702.33 | Hydrolase | 40.9 | 4.20e-10 | 70.6% | 50.3% |
| PF13242.13 | Hydrolase_like | 30.6 | 3.60e-07 | 53.8% | 97.3% |
D2
high
residues 16-71
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dv0A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.74 | 49.0 | 5.26e-01 | 75.0% | 84.4% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.72 | 63.0 | 5.58e-01 | 96.4% | 88.6% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.71 | 51.0 | 4.93e-01 | 76.8% | 71.9% |
| 2vsqA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.67 | 52.0 | 3.38e-01 | 83.9% | 71.1% |
| 1ku9B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 47.0 | 4.02e-01 | 76.8% | 58.6% |
| 3bs3A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 47.0 | 4.67e-01 | 91.1% | 73.3% |
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.63 | 48.0 | 4.60e-01 | 87.5% | 70.3% |
| 1furB03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.63 | 47.0 | 4.84e-01 | 91.1% | 94.1% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.63 | 50.0 | 4.36e-01 | 89.3% | 61.8% |
| 8c5yA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 52.0 | 3.74e-01 | 100.0% | 70.0% |
| 3kzhB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.60 | 50.0 | 3.21e-01 | 100.0% | 80.9% |
| 1cukA03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 42.0 | 4.40e-01 | 75.0% | 95.8% |
| 1ef4A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.58 | 42.0 | 4.26e-01 | 94.6% | 80.0% |
| 2fjrA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 45.0 | 4.13e-01 | 92.9% | 63.2% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.58 | 46.0 | 3.40e-01 | 96.4% | 99.5% |
| 1ichA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.58 | 47.0 | 4.25e-01 | 100.0% | 69.0% |
| 1wxpA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.56 | 46.0 | 4.18e-01 | 100.0% | 69.0% |
| 6sdkA01 | 1.10.10.2830 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 38.0 | 3.25e-01 | 75.0% | 54.6% |
| 1u9pA00 | 1.10.1220.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like | 0.54 | 44.0 | 3.67e-01 | 89.3% | 76.0% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.53 | 40.0 | 3.06e-01 | 83.9% | 55.8% |
| 1o20A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.51 | 39.0 | 2.49e-01 | 82.1% | 73.2% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287843 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.94 | 87.0 | 5.66e-01 | 100.0% | 26.0% |
| 3838973 | 885.1.1.1 ↗ | a+b complex topology › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › Transcription factor NusA, N-terminal domain › NusA_N | 0.79 | 57.0 | 4.27e-01 | 75.0% | 93.8% |
| 3430842 | 103.1.1.39 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF1421 | 0.76 | 54.0 | 5.50e-01 | 75.0% | 80.0% |
| 4964973 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.76 | 55.0 | 5.99e-01 | 76.8% | 97.8% |
| 4984124 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.70 | 50.0 | 4.77e-01 | 75.0% | 64.6% |
| 4422641 | 2004.1.1.363 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C | 0.69 | 59.0 | 3.39e-01 | 100.0% | 12.0% |
| 4982319 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.68 | 60.0 | 3.93e-01 | 96.4% | 30.0% |
| 4166913 | 1156.1.1.1 ↗ | alpha complex topology › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124_C | 0.68 | 53.0 | 3.88e-01 | 83.9% | 40.0% |
| 3603383 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 48.0 | 4.62e-01 | 76.8% | 70.8% |
| 3699607 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.67 | 48.0 | 3.48e-01 | 73.2% | 60.4% |
| 4218595 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.67 | 53.0 | 3.48e-01 | 87.5% | 82.4% |
| 3913681 | 103.1.1.56 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_DHX29 | 0.65 | 45.0 | 4.72e-01 | 75.0% | 82.0% |
| 5012960 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.64 | 51.0 | 4.39e-01 | 89.3% | 87.8% |
| 3981557 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 43.0 | 4.01e-01 | 75.0% | 76.0% |
| 3507722 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.62 | 52.0 | 4.49e-01 | 100.0% | 68.4% |
| 3725440 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.61 | 43.0 | 3.69e-01 | 73.2% | 74.7% |
| 3326500 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.60 | 46.0 | 4.58e-01 | 89.3% | 91.7% |
| 5012511 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 50.0 | 3.80e-01 | 100.0% | 63.4% |
| 3278040 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 36.0 | 3.56e-01 | 73.2% | 56.7% |
| 47273 | 101.4.1.1 ↗ | alpha arrays › HTH › RPB10 › RPB10 › RNA_pol_N | 0.58 | 42.0 | 4.26e-01 | 94.6% | 80.0% |
| 4968900 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 40.0 | 4.10e-01 | 75.0% | 79.6% |
| 3871036 | 103.1.1.27 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 | 0.57 | 47.0 | 4.69e-01 | 94.6% | 91.7% |
| 3590480 | 101.1.4.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 | 0.55 | 43.0 | 3.56e-01 | 87.5% | 57.1% |
| 4058983 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 40.0 | 2.61e-01 | 83.9% | 15.3% |
| None | — | 0.54 | 40.0 | 2.71e-01 | 80.4% | 40.4% | |
| 3277496 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 46.0 | 2.98e-01 | 100.0% | 23.8% |