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AY357582.2__AAQ63327.1__Nazgul26__00026
Bact-VirAY357582.2__AAQ63327.1__Nazgul26__00026
Identity
- Accession:
- AY357582 ↗
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Casjensviridae›
Nazgulvirus›
Burkholderia_phage_BcepNazgul
TaxID: 242861
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-80
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6mfcA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 40.0 | 3.06e-01 | 81.6% | 91.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4541761 | 2005.1.1.29 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g | 0.54 | 39.0 | 2.61e-01 | 76.3% | 53.4% |
| 3699005 | 213.1.1.5 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS | 0.54 | 45.0 | 3.46e-01 | 90.8% | 70.6% |
| 3717569 | 213.1.1.5 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › MOZ_SAS | 0.52 | 43.0 | 3.34e-01 | 90.8% | 68.8% |
| 4796556 | 1003.1.1.0 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 wedge domain › CRISPR-associated endonuclease Cas9 wedge domain › CRISPR-associated endonuclease Cas9 wedge domain | 0.52 | 39.0 | 3.49e-01 | 80.3% | 81.8% |
| 4168529 | 67.1.1.1 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C | 0.52 | 39.0 | 3.47e-01 | 81.6% | 73.0% |
| 3592680 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 43.0 | 3.43e-01 | 90.8% | 67.6% |
| 3486325 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 43.0 | 3.67e-01 | 94.7% | 79.2% |
| 4524152 | 375.1.1.203 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1, tRNA-synt_1g | 0.50 | 35.0 | 2.32e-01 | 76.3% | 56.6% |
D2
high
residues 104-165
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.80 | 53.0 | 5.27e-01 | 71.0% | 66.2% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.78 | 54.0 | 5.06e-01 | 72.6% | 60.0% |
| 1yg2A02 | 6.10.140.190 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 51.0 | 4.48e-01 | 72.6% | 48.9% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.75 | 52.0 | 4.99e-01 | 72.6% | 73.2% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 52.0 | 3.43e-01 | 72.6% | 20.8% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.74 | 51.0 | 4.78e-01 | 71.0% | 64.9% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 50.0 | 4.62e-01 | 72.6% | 54.3% |
| 4hwhE00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.74 | 52.0 | 4.56e-01 | 72.6% | 52.3% |
| 3hr0B01 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 51.0 | 4.72e-01 | 72.6% | 84.8% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.73 | 53.0 | 5.28e-01 | 75.8% | 73.4% |
| 4hwdD00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.73 | 51.0 | 4.44e-01 | 72.6% | 51.1% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.73 | 50.0 | 5.04e-01 | 72.6% | 79.7% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.72 | 61.0 | 5.16e-01 | 91.9% | 83.2% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.72 | 51.0 | 5.30e-01 | 75.8% | 86.2% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.71 | 43.0 | 3.68e-01 | 83.9% | 38.0% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 51.0 | 4.85e-01 | 75.8% | 67.1% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.71 | 49.0 | 4.05e-01 | 72.6% | 41.3% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.71 | 51.0 | 4.71e-01 | 75.8% | 84.6% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 50.0 | 4.99e-01 | 75.8% | 83.1% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.69 | 50.0 | 4.53e-01 | 75.8% | 84.0% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.69 | 50.0 | 4.68e-01 | 75.8% | 64.9% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.67 | 50.0 | 4.85e-01 | 79.0% | 95.7% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 47.0 | 4.99e-01 | 74.2% | 85.7% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 41.0 | 4.42e-01 | 80.6% | 73.1% |
| 2gscC00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.66 | 56.0 | 4.59e-01 | 91.9% | 70.0% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.66 | 47.0 | 3.63e-01 | 75.8% | 35.0% |
| 3cbuA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.66 | 46.0 | 3.62e-01 | 74.2% | 39.6% |
| 1wa8A00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.66 | 45.0 | 3.89e-01 | 72.6% | 48.5% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 46.0 | 4.75e-01 | 77.4% | 76.7% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 44.0 | 4.48e-01 | 74.2% | 76.3% |
| 2p4vA01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.62 | 42.0 | 4.04e-01 | 72.6% | 60.5% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.61 | 54.0 | 3.47e-01 | 100.0% | 91.7% |
| 1gt0D00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.61 | 46.0 | 4.27e-01 | 82.3% | 79.7% |
| 2ouwB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.61 | 48.0 | 3.64e-01 | 87.1% | 38.2% |
| 2yi9A05 | 1.20.1270.270 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › VP1, C-terminal extension domain | 0.60 | 47.0 | 4.47e-01 | 87.1% | 71.4% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 47.0 | 3.33e-01 | 91.9% | 32.7% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 42.0 | 4.24e-01 | 75.8% | 77.4% |
| 3u7iA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.57 | 47.0 | 3.25e-01 | 90.3% | 90.8% |
| 4errB00 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 40.0 | 3.73e-01 | 75.8% | 80.7% |
| 2ip6A00 | 1.20.1440.140 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.57 | 45.0 | 4.11e-01 | 90.3% | 85.1% |
| 4fjqA01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 49.0 | 3.02e-01 | 96.8% | 32.4% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.56 | 33.0 | 3.47e-01 | 80.6% | 63.2% |
| 1eo0A00 | 1.20.930.10 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 0.56 | 44.0 | 4.19e-01 | 90.3% | 72.7% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 39.0 | 3.29e-01 | 75.8% | 49.6% |
| 3moiA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.50 | 44.0 | 3.24e-01 | 100.0% | 49.1% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3204035 | 1.1.17.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 | 0.81 | 57.0 | 3.47e-01 | 72.6% | 14.4% |
| 3198319 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.81 | 58.0 | 3.59e-01 | 75.8% | 14.6% |
| 3749004 | 3559.1.1.0 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 | 0.80 | 56.0 | 4.69e-01 | 72.6% | 61.0% |
| 3754639 | 150.5.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C | 0.79 | 57.0 | 5.09e-01 | 75.8% | 61.2% |
| 3196783 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.79 | 57.0 | 5.63e-01 | 75.8% | 75.4% |
| 4493879 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.79 | 55.0 | 4.47e-01 | 72.6% | 46.4% |
| 3477418 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.78 | 56.0 | 4.83e-01 | 75.8% | 53.7% |
| 4177674 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.78 | 56.0 | 4.58e-01 | 75.8% | 46.4% |
| 5043629 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.76 | 63.0 | 5.66e-01 | 88.7% | 100.0% |
| 3993403 | 616.1.1.26 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › NPP-6_helical | 0.75 | 53.0 | 3.88e-01 | 74.2% | 79.4% |
| 3583169 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.74 | 51.0 | 4.73e-01 | 72.6% | 83.7% |
| 4165971 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.73 | 62.0 | 5.27e-01 | 93.5% | 96.0% |
| 3212195 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.73 | 55.0 | 4.46e-01 | 100.0% | 44.5% |
| 3973208 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.71 | 49.0 | 4.63e-01 | 83.9% | 60.0% |
| 4946455 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.70 | 50.0 | 4.63e-01 | 75.8% | 58.7% |
| 4452686 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.70 | 60.0 | 4.58e-01 | 98.4% | 88.7% |
| 4029754 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.68 | 46.0 | 4.18e-01 | 85.5% | 51.8% |
| 4052416 | 192.4.1.1 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › Ribosomal_L29 | 0.67 | 48.0 | 4.43e-01 | 75.8% | 63.7% |
| 3250375 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.67 | 45.0 | 4.27e-01 | 71.0% | 60.0% |
| 4609007 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.66 | 35.0 | 3.93e-01 | 79.0% | 66.0% |
| 4025 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.66 | 45.0 | 3.89e-01 | 72.6% | 48.5% |
| 5035839 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.65 | 50.0 | 4.78e-01 | 87.1% | 100.0% |
| 3619662 | 192.12.1.3 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM › DUF747 | 0.64 | 46.0 | 4.24e-01 | 75.8% | 58.7% |
| 4942772 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.63 | 45.0 | 4.44e-01 | 75.8% | 73.8% |
| 3844040 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.62 | 42.0 | 4.22e-01 | 71.0% | 75.4% |
| 4989575 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.61 | 55.0 | 3.12e-01 | 100.0% | 52.2% |
| 3583564 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.61 | 40.0 | 3.94e-01 | 93.5% | 61.4% |
| 3731064 | 633.6.1.0 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like | 0.61 | 48.0 | 4.21e-01 | 96.8% | 94.5% |
| 3843294 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.59 | 48.0 | 3.55e-01 | 95.2% | 72.4% |
| 3837790 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.58 | 43.0 | 3.54e-01 | 79.0% | 85.5% |
| 4870082 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.57 | 39.0 | 3.88e-01 | 72.6% | 68.2% |