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AY357582.2__AAQ63341.1__Nazgul41__00041

Bact-Vir

AY357582.2__AAQ63341.1__Nazgul41__00041

Identity

Accession:
AY357582 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Nazgulvirus› Burkholderia_phage_BcepNazgul

TaxID: 242861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-49
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 52.0 4.51e-01 91.3% 44.3%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 48.0 3.92e-01 91.3% 34.9%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.73 43.0 4.79e-01 71.7% 79.4%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 57.0 5.14e-01 100.0% 63.6%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 58.0 5.06e-01 100.0% 59.5%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 57.0 5.12e-01 100.0% 62.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 49.0 4.35e-01 100.0% 50.0%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 54.0 4.78e-01 95.7% 57.7%
5ygqA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 50.0 3.67e-01 100.0% 29.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 59.0 5.26e-01 100.0% 68.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 56.0 5.00e-01 100.0% 64.2%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 47.0 4.30e-01 100.0% 53.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.51e-01 93.5% 59.7%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 44.0 2.60e-01 76.1% 8.7%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 45.0 3.88e-01 97.8% 42.3%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 49.0 4.40e-01 100.0% 57.1%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 54.0 4.64e-01 100.0% 57.1%
4z3xA03 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.65 49.0 3.32e-01 84.8% 24.7%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.02e-01 82.6% 54.2%
2bwnB01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.65 49.0 3.41e-01 84.8% 62.9%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.65 54.0 3.77e-01 95.7% 73.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.43e-01 100.0% 70.0%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 46.0 4.83e-01 97.8% 94.9%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 46.0 4.22e-01 100.0% 57.6%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 45.0 3.89e-01 95.7% 49.3%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 43.0 3.27e-01 97.8% 27.9%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.61 39.0 2.91e-01 82.6% 25.7%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.61 47.0 3.41e-01 100.0% 27.7%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.60 38.0 3.28e-01 76.1% 38.0%
5xuhA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.58 40.0 2.93e-01 71.7% 49.6%
1v5mA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 48.0 3.55e-01 100.0% 36.0%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 42.0 3.88e-01 100.0% 59.4%
4geqB00 3.30.160.430 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 43.0 4.05e-01 89.1% 67.2%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.57 41.0 2.55e-01 78.3% 24.7%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 3.56e-01 100.0% 40.3%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.56 46.0 3.65e-01 93.5% 82.5%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.75e-01 100.0% 46.0%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 48.0 3.25e-01 100.0% 59.3%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.43e-01 100.0% 52.1%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 4.01e-01 100.0% 63.4%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.55 44.0 3.91e-01 97.8% 64.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 43.0 3.61e-01 100.0% 49.4%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.54 41.0 3.28e-01 87.0% 71.8%
1xtfA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.53 41.0 2.47e-01 97.8% 52.9%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.53 35.0 3.66e-01 93.5% 78.0%
3oyyB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.74e-01 82.6% 87.9%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 45.0 3.52e-01 100.0% 80.8%
1zc6A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.09e-01 100.0% 98.7%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 2.97e-01 76.1% 68.5%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.53e-01 97.8% 86.1%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 43.0 2.86e-01 100.0% 59.6%
7pthC01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.50 37.0 2.25e-01 91.3% 44.5%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.50 40.0 3.40e-01 100.0% 79.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3216433 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 45.0 4.73e-01 71.7% 65.0%
3994170 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.73 47.0 3.04e-01 76.1% 15.1%
3896688 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.72 59.0 5.41e-01 100.0% 70.0%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 49.0 4.13e-01 100.0% 42.5%
3705445 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.71 44.0 2.54e-01 73.9% 6.2%
5058457 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.71 50.0 4.49e-01 93.5% 53.8%
4041343 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.70 51.0 5.05e-01 100.0% 74.0%
3992164 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.70 45.0 2.66e-01 76.1% 8.3%
5053906 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.70 52.0 4.83e-01 100.0% 63.3%
4014861 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 44.0 2.79e-01 76.1% 12.2%
4813310 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 56.0 5.03e-01 100.0% 64.2%
3541613 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 54.0 4.83e-01 95.7% 60.3%
3995431 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.69 53.0 4.69e-01 97.8% 56.0%
3761120 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.68 54.0 4.90e-01 95.7% 64.6%
3490755 375.1.1.202 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tmemb_55A 0.67 41.0 4.35e-01 71.7% 70.0%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 51.0 4.46e-01 100.0% 54.3%
3764537 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 55.0 4.65e-01 100.0% 53.8%
5056826 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.66 50.0 4.56e-01 100.0% 60.0%
3881240 3928.1.1.7 ↗ alpha bundles › Cell division protein CrgA › Cell division protein CrgA › Cell division protein CrgA › Tmemb_55A 0.66 40.0 3.54e-01 71.7% 40.0%
5081442 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.65 49.0 4.35e-01 100.0% 55.7%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.64 49.0 4.37e-01 100.0% 57.4%
3963980 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.64 45.0 3.30e-01 97.8% 25.2%
3515806 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 53.0 3.90e-01 100.0% 57.0%
4968865 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.63e-01 100.0% 80.0%
4944045 4.17.1.2 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › Asparaginase 0.63 48.0 4.28e-01 100.0% 55.7%
3884680 292.2.1.6 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.62 54.0 4.12e-01 100.0% 58.2%
3506222 394.1.1.0 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins 0.62 46.0 4.65e-01 97.8% 82.2%
4277582 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.62 45.0 3.33e-01 97.8% 27.4%
3392529 719.2.1.1 ↗ beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N 0.61 39.0 3.23e-01 82.6% 33.3%
4847869 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.60 42.0 2.70e-01 76.1% 17.0%
4330222 207.5.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C 0.59 49.0 3.72e-01 97.8% 50.0%
3998421 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 49.0 4.52e-01 100.0% 76.9%
1700100 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.58 46.0 4.29e-01 97.8% 68.9%
3858569 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.58 48.0 3.38e-01 100.0% 29.3%
3559299 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 47.0 3.50e-01 100.0% 33.8%
3657220 2004.1.1.73 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.57 44.0 2.58e-01 84.8% 32.0%
4295284 1077.1.1.1 ↗ few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.57 43.0 3.78e-01 87.0% 66.7%
3954764 316.1.1.68 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PF28438 0.57 43.0 3.77e-01 87.0% 66.7%
3799904 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.57 48.0 2.82e-01 100.0% 12.5%
3624498 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.22e-01 100.0% 32.0%
3673266 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 44.0 3.73e-01 100.0% 50.6%
4191831 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.56 45.0 2.87e-01 100.0% 17.0%
3252283 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.51e-01 100.0% 40.0%
3995979 220.1.1.34 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_9 0.56 45.0 3.36e-01 100.0% 33.8%
3266727 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 3.59e-01 100.0% 42.6%
4338307 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 40.0 2.52e-01 100.0% 14.0%
3753697 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 43.0 4.14e-01 100.0% 78.3%
3592522 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.54 41.0 3.12e-01 87.0% 60.8%
3503630 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.46e-01 100.0% 50.4%
3608400 2485.1.1.19 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 0.54 41.0 2.94e-01 84.8% 48.1%
3286642 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.56e-01 100.0% 49.1%
3585813 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.53 42.0 3.91e-01 100.0% 72.3%
3399725 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.52 42.0 3.32e-01 100.0% 40.9%
3258602 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.25e-01 100.0% 39.2%
3219161 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.52 42.0 3.36e-01 100.0% 42.7%
4006548 331.19.1.2 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin_N 0.52 37.0 3.12e-01 82.6% 62.1%
4015194 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 45.0 3.44e-01 100.0% 61.8%
3264240 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.51 38.0 3.01e-01 100.0% 34.4%
3960804 327.5.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C 0.50 39.0 2.93e-01 93.5% 67.4%