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AY357582.2__AAQ63350.1__Nazgul50__00050

Bact-Vir

AY357582.2__AAQ63350.1__Nazgul50__00050

Identity

Accession:
AY357582 ↗
Kingdom:
phage

Quality

54.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Nazgulvirus› Burkholderia_phage_BcepNazgul

TaxID: 242861

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-122_177-276
PDB
D2 high residues 395-541
PDB
Domain cluster: rep: MN698245.1__QGZ18159.1__HTVC111P_gp46__00046__D46-220
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF20155.5 best TMP_3 75.2 8.00e-21 100.0% 72.9%
D3 medium residues 123-176
PDB
D4 medium residues 345-394_542-565
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.70 49.0 4.48e-01 74.3% 57.6%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 46.0 4.13e-01 86.5% 53.4%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.65 47.0 4.32e-01 81.1% 59.6%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 50.0 4.45e-01 81.1% 61.4%
1zkeA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.47e-01 75.7% 88.9%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.63 47.0 4.16e-01 85.1% 55.2%
3lnnB03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.62 46.0 4.82e-01 81.1% 86.6%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.62 42.0 3.41e-01 70.3% 70.9%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.60 43.0 3.97e-01 86.5% 58.3%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.60 48.0 4.50e-01 85.1% 71.1%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 44.0 3.89e-01 86.5% 53.7%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 46.0 4.16e-01 83.8% 79.4%
3ibpA01 1.20.58.850 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 46.0 4.67e-01 82.4% 98.6%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.59 39.0 4.24e-01 81.1% 82.3%
2qffA00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.59 38.0 3.87e-01 85.1% 66.2%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 43.0 4.48e-01 79.7% 85.1%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.58 49.0 4.43e-01 91.9% 92.0%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.58 39.0 3.88e-01 86.5% 66.2%
4kzsA02 6.10.140.1870 Special › Helix non-globular › Helix Hairpins › 0.58 43.0 4.49e-01 83.8% 84.3%
4iggA01 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.57 43.0 4.51e-01 81.1% 89.6%
6qumQ00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.57 43.0 4.35e-01 81.1% 94.6%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 48.0 4.26e-01 93.2% 80.4%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 3.51e-01 81.1% 49.2%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.54 43.0 3.94e-01 86.5% 69.4%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 33.0 3.30e-01 71.6% 63.2%
3h3mA00 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.51 38.0 3.58e-01 81.1% 65.2%
3tjtA01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.51 40.0 4.07e-01 86.5% 95.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4057957 603.5.1.1 ↗ alpha bundles › STAT-like › FlgN-like › FlgN-like › FlgN 0.73 52.0 4.10e-01 73.0% 48.6%
5061328 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.71 44.0 4.52e-01 77.0% 65.7%
3969975 3758.2.1.0 ↗ alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB 0.70 48.0 3.40e-01 81.1% 24.7%
320075 632.6.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Epsilon_antitox 0.69 48.0 4.39e-01 74.3% 55.8%
5061727 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.69 38.0 4.07e-01 73.0% 63.1%
4934784 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.67 38.0 3.62e-01 74.3% 49.4%
3308724 3721.1.1.2 ↗ alpha bundles › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › Protein regulator of cytokinesis 1 (PRC1) dimerization domain › MAP65_ASE1 0.66 43.0 4.08e-01 86.5% 55.6%
5059279 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.66 44.0 4.33e-01 70.3% 63.7%
3927560 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.66 43.0 4.68e-01 81.1% 81.7%
5061725 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.65 45.0 4.37e-01 74.3% 66.3%
5058630 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.64 36.0 3.85e-01 75.7% 64.6%
3570117 375.6.1.2 ↗ few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 0.63 45.0 4.98e-01 74.3% 93.3%
4025853 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.62 42.0 3.22e-01 74.3% 30.6%
5048929 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.62 47.0 4.86e-01 82.4% 100.0%
3232705 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.62 46.0 3.98e-01 82.4% 51.3%
4541657 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.61 42.0 4.10e-01 70.3% 65.0%
4026684 192.20.1.7 ↗ alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD › PF26729 0.61 47.0 4.17e-01 85.1% 57.1%
5017062 7094.1.1.4 ↗ alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › PF27273 0.61 47.0 4.70e-01 81.1% 97.3%
3602776 605.6.1.12 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › PF27273 0.61 46.0 4.52e-01 81.1% 95.0%
4209005 632.15.1.4 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › HSP70 0.61 44.0 4.29e-01 86.5% 68.8%
5048247 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.60 42.0 3.78e-01 81.1% 54.0%
3754265 603.1.1.187 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DNA_repr_REX1B 0.60 51.0 4.78e-01 93.2% 97.8%
3511563 192.29.1.143 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › CCDC28 0.59 45.0 4.00e-01 86.5% 57.1%
3823991 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.59 46.0 4.02e-01 81.1% 67.6%
3491418 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.59 45.0 4.52e-01 81.1% 80.0%
5012747 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.59 48.0 3.43e-01 86.5% 32.2%
3556027 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 45.0 4.31e-01 82.4% 71.8%
5052081 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.04e-01 71.6% 31.5%
3959888 3922.1.1.159 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PPE 0.57 44.0 3.81e-01 81.1% 79.1%
4406698 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.57 45.0 4.14e-01 85.1% 67.4%
3413114 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.56 42.0 4.46e-01 83.8% 90.8%
3855461 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.55 45.0 4.31e-01 86.5% 75.3%
3713791 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 45.0 3.98e-01 90.5% 76.4%
4683346 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.55 42.0 4.12e-01 82.4% 77.2%
3682039 604.1.1.188 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Mito_carr 0.54 44.0 3.80e-01 86.5% 59.1%
4936497 150.1.1.14 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like 0.54 47.0 4.51e-01 100.0% 84.1%
D5 medium residues 566-630_658-774
PDB