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AY374414.2__AAQ90250.1__X__00005
Bact-VirAY374414.2__AAQ90250.1__X__00005
Identity
- Accession:
- AY374414 ↗
- Kingdom:
- phage
Quality
56.8
mean pLDDT
Taxonomy
Loebvirae›
Hofneiviricota›
Faserviricetes›
Tubulavirales›
Inoviridae›
Porrectionivirus›
Ralstonia_phage_p12J
TaxID: 247080
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-122
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.66 | 37.0 | 4.19e-01 | 70.5% | 74.1% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.61 | 37.0 | 3.57e-01 | 79.5% | 51.6% |
| 1jm1A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.57 | 43.0 | 3.24e-01 | 80.8% | 77.2% |
| 2x3lA01 | 3.90.1150.150 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.57 | 43.0 | 3.91e-01 | 80.8% | 66.7% |
| 6d0aA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 40.0 | 3.62e-01 | 76.9% | 70.4% |
| 1bebA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 41.0 | 3.34e-01 | 78.2% | 70.5% |
| 3dzzA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 40.0 | 3.37e-01 | 78.2% | 55.6% |
| 1xi9B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 40.0 | 3.30e-01 | 78.2% | 54.9% |
| 3t32A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 40.0 | 3.38e-01 | 78.2% | 59.0% |
| 1odhA01 | 2.20.25.670 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain | 0.54 | 37.0 | 3.83e-01 | 75.6% | 77.5% |
| 4m2mA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 38.0 | 3.11e-01 | 75.6% | 51.6% |
| 1c7nA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 38.0 | 3.10e-01 | 78.2% | 48.2% |
| 4ix8A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 38.0 | 3.21e-01 | 78.2% | 55.9% |
| 3r6aB00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 33.0 | 2.92e-01 | 74.4% | 41.0% |
| 4oevA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 36.0 | 2.90e-01 | 71.8% | 47.7% |
| 2douB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 37.0 | 3.08e-01 | 78.2% | 49.7% |
| 2fpnA01 | 3.30.2030.10 | Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like | 0.52 | 35.0 | 2.99e-01 | 79.5% | 40.0% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.48e-01 | 78.2% | 76.3% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.16e-01 | 78.2% | 55.0% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.46e-01 | 78.2% | 75.5% |
| 5o5cB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 3.23e-01 | 79.5% | 61.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4993189 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.64 | 43.0 | 4.78e-01 | 78.2% | 90.0% |
| 3495285 | 331.18.1.4 ↗ | a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › COR-B | 0.62 | 35.0 | 2.85e-01 | 73.1% | 28.7% |
| 3963560 | 6043.1.1.0 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like | 0.62 | 33.0 | 3.71e-01 | 70.5% | 66.7% |
| 3860784 | 376.1.6.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 | 0.61 | 35.0 | 3.78e-01 | 74.4% | 66.2% |
| 4188110 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.61 | 38.0 | 4.04e-01 | 75.6% | 73.8% |
| 4235358 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.60 | 35.0 | 3.77e-01 | 74.4% | 66.2% |
| 3422937 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.60 | 38.0 | 4.16e-01 | 71.8% | 83.3% |
| 3796107 | 227.1.1.1 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N | 0.59 | 42.0 | 4.06e-01 | 87.2% | 65.6% |
| 4680442 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.57 | 41.0 | 3.33e-01 | 78.2% | 66.7% |
| 4394859 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.57 | 41.0 | 3.50e-01 | 78.2% | 70.4% |
| 3616581 | 7512.1.1.6 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 | 0.56 | 32.0 | 2.20e-01 | 73.1% | 13.7% |
| 3926450 | 2004.1.1.230 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like | 0.55 | 32.0 | 2.57e-01 | 70.5% | 25.9% |
| 4956650 | 2008.2.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo | 0.55 | 37.0 | 3.48e-01 | 78.2% | 55.0% |
| 3403740 | 5.1.3.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP | 0.55 | 40.0 | 2.57e-01 | 75.6% | 19.4% |
| 3416404 | 5.1.4.240 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MRJP | 0.55 | 39.0 | 2.54e-01 | 75.6% | 18.9% |
| 3931290 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 40.0 | 3.53e-01 | 79.5% | 66.1% |
| 3203216 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.54 | 36.0 | 3.03e-01 | 76.9% | 38.1% |
| 3967404 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.54 | 32.0 | 3.40e-01 | 75.6% | 64.3% |
| 3850091 | 4099.1.1.17 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM2 | 0.54 | 36.0 | 2.68e-01 | 78.2% | 25.1% |
| 5048423 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 41.0 | 3.66e-01 | 84.6% | 90.4% |
| 3590828 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.53 | 39.0 | 3.54e-01 | 80.8% | 83.6% |
| 3436491 | 227.1.1.11 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 | 0.52 | 38.0 | 3.11e-01 | 97.4% | 38.7% |
| 4966078 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.52 | 37.0 | 3.25e-01 | 75.6% | 59.3% |
| 4214686 | 1.1.3.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ | 0.51 | 36.0 | 3.06e-01 | 75.6% | 84.1% |
| 4317800 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 44.0 | 3.72e-01 | 100.0% | 92.1% |
| 4016853 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 39.0 | 3.12e-01 | 84.6% | 77.6% |
| 3627237 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.51 | 31.0 | 3.43e-01 | 73.1% | 75.0% |
| 3500240 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.51 | 35.0 | 3.15e-01 | 71.8% | 62.7% |
| 4193772 | 331.1.1.13 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C | 0.51 | 31.0 | 3.09e-01 | 74.4% | 55.3% |
| 3247221 | 3016.1.1.4 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Pyridoxal_deC | 0.51 | 37.0 | 3.26e-01 | 79.5% | 60.8% |
| 3806422 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.50 | 31.0 | 3.09e-01 | 73.1% | 56.5% |
D2
medium
residues 125-259
D3
medium
residues 353-401
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.68 | 51.0 | 3.37e-01 | 81.6% | 53.9% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 51.0 | 4.28e-01 | 83.7% | 100.0% |
| 1v57A03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 41.0 | 2.92e-01 | 71.4% | 63.2% |
| 7ar7x01 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.57 | 43.0 | 2.98e-01 | 87.8% | 87.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4454794 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.66 | 49.0 | 3.46e-01 | 79.6% | 61.3% |
| 3835247 | 208.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep, Hexapep_2, PF28366 | 0.63 | 49.0 | 3.19e-01 | 87.8% | 64.8% |
| 3777040 | 220.1.1.120 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GARIL_Rab2_bd | 0.59 | 47.0 | 3.43e-01 | 91.8% | 76.7% |
| 4036029 | 101.1.2.561 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28826 | 0.57 | 42.0 | 3.04e-01 | 81.6% | 43.3% |
| 5001324 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 45.0 | 3.71e-01 | 100.0% | 80.0% |