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AY522334.1__AAS02082.1__X__00001
Bact-VirAY522334.1__AAS02082.1__X__00001
Identity
- Accession:
- AY522334 ↗
- Kingdom:
- phage
Quality
79.6
mean pLDDT
Taxonomy
TaxID: 2849703
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-94
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22671.2 best | Gp18_domIII_N | 30.0 | 7.90e-07 | 89.8% | 81.0% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hxlA01 | 3.30.1490.360 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.90 | 78.0 | 7.64e-01 | 100.0% | 87.5% |
| 3foaB01 | 3.40.50.11780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.73 | 65.0 | 4.33e-01 | 100.0% | 26.4% |
| 2dc1A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 48.0 | 4.14e-01 | 100.0% | 53.5% |
| 3r9pB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.60 | 51.0 | 3.71e-01 | 100.0% | 35.6% |
| 5ijaA00 | 3.40.50.1450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like | 0.58 | 49.0 | 3.76e-01 | 100.0% | 44.6% |
| 1jmvA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.55 | 44.0 | 3.44e-01 | 100.0% | 39.3% |
| 1yi8B01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 43.0 | 2.94e-01 | 89.8% | 31.0% |
| 3e11A00 | 3.30.2010.20 | Alpha Beta › 2-Layer Sandwich › Zincin-like › | 0.53 | 36.0 | 2.94e-01 | 100.0% | 36.8% |
| 4ipeB04 | 1.20.120.790 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Heat shock protein 90, C-terminal domain | 0.53 | 35.0 | 2.74e-01 | 100.0% | 31.7% |
| 3uogA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.51 | 39.0 | 2.80e-01 | 84.7% | 98.0% |
| 1u5tB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 39.0 | 3.56e-01 | 86.4% | 88.2% |
| 1cfzA00 | 3.40.50.1450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like | 0.51 | 42.0 | 3.21e-01 | 100.0% | 40.1% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1180325 | 2499.2.1.2 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1,Gp18_domIII_N | 0.81 | 67.0 | 6.00e-01 | 100.0% | 65.1% |
| 4995822 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.73 | 66.0 | 4.25e-01 | 100.0% | 23.1% |
| 4889792 | 2499.2.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 | 0.73 | 64.0 | 4.33e-01 | 100.0% | 27.9% |
| 5080732 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.64 | 57.0 | 4.17e-01 | 100.0% | 42.9% |
| 4988826 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.63 | 55.0 | 4.07e-01 | 100.0% | 41.1% |
| 4945159 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.62 | 53.0 | 4.01e-01 | 100.0% | 44.0% |
| 4985903 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.61 | 54.0 | 3.97e-01 | 100.0% | 40.6% |
| 5006670 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.61 | 53.0 | 4.15e-01 | 100.0% | 44.6% |
| 4989586 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.61 | 53.0 | 3.90e-01 | 100.0% | 39.4% |
| 5054852 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.60 | 46.0 | 3.79e-01 | 93.2% | 93.8% |
| 4998045 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.59 | 50.0 | 3.72e-01 | 100.0% | 38.8% |
| 1840629 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.58 | 49.0 | 3.76e-01 | 100.0% | 44.6% |
| 4931756 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.57 | 48.0 | 3.67e-01 | 100.0% | 42.0% |
| 5006656 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.57 | 48.0 | 3.65e-01 | 100.0% | 38.7% |
| 3354360 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.56 | 47.0 | 3.57e-01 | 100.0% | 40.0% |
| 4945332 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.56 | 45.0 | 3.58e-01 | 96.6% | 93.6% |
| 5036025 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.56 | 49.0 | 3.60e-01 | 100.0% | 36.9% |
| 4986230 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.56 | 48.0 | 3.95e-01 | 100.0% | 53.0% |
| 5078874 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.56 | 48.0 | 3.58e-01 | 100.0% | 40.0% |
| 3712015 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.56 | 43.0 | 3.27e-01 | 88.1% | 40.6% |
| 4950084 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.56 | 46.0 | 3.52e-01 | 100.0% | 39.4% |
| 5070172 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.55 | 46.0 | 3.42e-01 | 100.0% | 34.9% |
| 4931646 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.55 | 48.0 | 3.52e-01 | 100.0% | 36.7% |
| 3469954 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.54 | 42.0 | 3.19e-01 | 100.0% | 95.9% |
| 3783380 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.53 | 44.0 | 2.97e-01 | 100.0% | 23.5% |
| 3979601 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.52 | 42.0 | 3.31e-01 | 100.0% | 41.3% |
| 4122172 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.52 | 40.0 | 3.34e-01 | 91.5% | 73.4% |
| 5029719 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.52 | 44.0 | 3.01e-01 | 100.0% | 28.7% |
| 4956094 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.52 | 44.0 | 3.38e-01 | 100.0% | 40.0% |
| 5083909 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.52 | 42.0 | 3.32e-01 | 100.0% | 40.7% |
| 4944030 | 2011.2.1.0 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like | 0.52 | 43.0 | 3.24e-01 | 100.0% | 39.3% |
| 4655335 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.51 | 36.0 | 2.56e-01 | 98.3% | 20.9% |
| 3930904 | 2498.1.1.5 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N | 0.51 | 42.0 | 2.47e-01 | 100.0% | 17.9% |
| 5073469 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.50 | 40.0 | 2.91e-01 | 94.9% | 81.5% |
| 3366787 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.50 | 42.0 | 3.12e-01 | 100.0% | 34.7% |
D2
high
residues 102-175
Domain cluster:
rep: IMGVR_UViG_3300012983_000214-3300012983-Ga0123349_1000122021__D107-181
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17481.8 best | Phage_sheath_domII | 71.5 | 9.00e-20 | 98.7% | 77.5% |