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AY539836.1__AAS47881.1__BcepMu42__00042

Bact-Vir

AY539836.1__AAS47881.1__BcepMu42__00042

Identity

Accession:
AY539836 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bcepmuvirus› Burkholderia_phage_BcepMu

TaxID: 2881392

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-66
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.77 55.0 5.26e-01 76.0% 64.4%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.75 49.0 4.70e-01 76.0% 58.6%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.74 52.0 5.51e-01 74.0% 82.2%
1nt2B02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.74 54.0 4.91e-01 78.0% 59.7%
2odaA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.73 56.0 3.72e-01 84.0% 68.2%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.71 49.0 3.16e-01 82.0% 15.8%
5vntA00 1.10.950.10 Mainly Alpha › Orthogonal Bundle › Villin Headpiece Domain; Chain A › Villin headpiece domain 0.71 50.0 4.68e-01 76.0% 66.7%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 52.0 4.16e-01 78.0% 41.5%
3ppuB02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 50.0 3.79e-01 74.0% 32.7%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.70 53.0 4.66e-01 80.0% 90.5%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.69 51.0 4.41e-01 80.0% 77.2%
3fxdB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 48.0 4.52e-01 76.0% 72.4%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 56.0 4.68e-01 100.0% 96.5%
3hinA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.62 45.0 4.38e-01 80.0% 70.9%
2yfqB01 1.10.8.1210 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 44.0 4.35e-01 86.0% 76.9%
3l4gB03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.57 43.0 3.85e-01 84.0% 93.2%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989824 192.1.1.0 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.81 57.0 5.77e-01 74.0% 80.0%
3680918 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.73 53.0 4.85e-01 78.0% 64.6%
3435283 611.8.1.1 ↗ alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › Ariadne 0.72 65.0 4.32e-01 100.0% 60.0%
3903793 101.1.17.36 ↗ alpha arrays › HTH › HTH › FF domain › CHDNT 0.71 52.0 4.18e-01 92.0% 41.1%
3426400 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 53.0 5.19e-01 84.0% 74.5%
3691300 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.71 47.0 4.09e-01 70.0% 45.3%
3366093 6013.1.1.0 ↗ alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.70 52.0 4.96e-01 84.0% 68.3%
3794323 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.70 52.0 5.48e-01 84.0% 91.1%
3269293 2004.1.1.366 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NPHP3_N 0.69 59.0 3.91e-01 100.0% 25.5%
3301615 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.69 51.0 4.78e-01 84.0% 63.1%
3839004 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.68 57.0 4.75e-01 96.0% 81.1%
3904078 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.67 51.0 4.52e-01 82.0% 69.9%
3596754 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.66 47.0 4.36e-01 88.0% 58.5%
3222020 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.66 51.0 3.29e-01 84.0% 22.3%
4966557 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 56.0 3.37e-01 96.0% 16.6%
3669967 109.4.1.263 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UVSSA_N 0.63 49.0 3.89e-01 86.0% 42.1%
3658020 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.63 53.0 3.88e-01 94.0% 71.4%
3177418 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.60 51.0 3.54e-01 94.0% 36.4%