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AY605181.1__AAT38393.1__X__00034

Bact-Vir

AY605181.1__AAT38393.1__X__00034

Identity

Accession:
AY605181 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ryyoungvirus› Burkholderia_phage_BcepC6B

TaxID: 2883949

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 47-119
PDB
Domain cluster: rep: NC_070846.1__YP_010657380.1__PP739_gp13__00013__D256-334
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.66 54.0 4.32e-01 89.0% 56.3%
4p4mA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 38.0 3.30e-01 71.2% 42.6%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.57 50.0 3.90e-01 97.3% 72.8%
8aw3201 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 40.0 3.25e-01 79.5% 53.2%
3rvaA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.55 40.0 3.17e-01 76.7% 84.6%
7x4qA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 41.0 3.37e-01 84.9% 96.7%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.55 37.0 3.36e-01 71.2% 85.8%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 39.0 3.18e-01 78.1% 54.5%
5c4iE01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.54 46.0 3.37e-01 97.3% 94.3%
4y2fA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 39.0 3.17e-01 84.9% 39.9%
1chmA01 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.54 40.0 3.15e-01 79.5% 73.5%
5tdeA03 3.40.50.261 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains 0.54 45.0 3.49e-01 100.0% 98.4%
1x31B02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.53 46.0 3.64e-01 98.6% 60.4%
1vhhA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.53 41.0 3.27e-01 86.3% 65.6%
6p58A00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 42.0 3.35e-01 95.9% 42.7%
7qprA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 41.0 3.34e-01 83.6% 74.8%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 33.0 3.39e-01 80.8% 66.2%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.52 43.0 3.23e-01 97.3% 66.7%
4mphA00 3.30.1380.10 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › 0.52 42.0 3.30e-01 94.5% 72.4%
3p09A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 43.0 2.92e-01 90.4% 68.2%
2vycA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 36.0 2.69e-01 74.0% 82.1%
3qh4A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.94e-01 100.0% 71.0%
2qg7B02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.52 39.0 2.69e-01 80.8% 66.4%
3ctzA02 3.40.350.10 Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain 0.51 38.0 2.96e-01 78.1% 76.8%
7lscA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 44.0 3.42e-01 95.9% 45.0%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 44.0 3.38e-01 100.0% 55.6%
1k1gA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.51 34.0 2.97e-01 71.2% 51.6%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 40.0 3.04e-01 87.7% 40.5%
4q5tA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 37.0 2.99e-01 79.5% 41.5%
1iq4A00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.50 39.0 3.09e-01 90.4% 85.5%
5xyjA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 43.0 3.40e-01 95.9% 87.9%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.50 38.0 3.68e-01 82.2% 77.1%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4922670 3820.1.1.6 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI, Cas9_RuvC 0.71 51.0 3.79e-01 74.0% 47.3%
4370946 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.68 56.0 4.22e-01 87.7% 84.1%
4999440 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.68 54.0 5.16e-01 84.9% 76.5%
5016552 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.67 52.0 4.52e-01 82.2% 60.0%
4100162 378.1.1.36 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › PF29604 0.64 54.0 5.08e-01 94.5% 97.8%
3694783 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.63 54.0 4.18e-01 98.6% 76.5%
4886250 4205.1.1.1 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like › Syd 0.61 43.0 3.24e-01 75.3% 98.9%
3354533 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.58 43.0 3.65e-01 80.8% 47.7%
3970702 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 46.0 3.78e-01 89.0% 77.1%
3977110 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.57 47.0 4.51e-01 93.2% 95.3%
3539435 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.57 39.0 2.54e-01 71.2% 17.7%
3707938 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 39.0 3.43e-01 72.6% 47.0%
3887525 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.56 38.0 2.48e-01 71.2% 17.0%
3411475 4292.2.1.2 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.56 41.0 3.38e-01 79.5% 91.4%
5080086 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.55 47.0 4.63e-01 95.9% 90.0%
4109165 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.55 42.0 3.55e-01 82.2% 100.0%
605 4.1.2.1 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › SspB 0.55 37.0 3.36e-01 71.2% 85.8%
3939986 864.1.1.3 ↗ a+b two layers › DLC › DLC › DLC › Ground-like 0.54 37.0 3.49e-01 71.2% 65.6%
5078518 2008.1.1.220 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_10 0.53 35.0 3.05e-01 84.9% 44.5%
4442936 2484.3.1.5 ↗ mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › PepQ_N 0.53 41.0 3.23e-01 83.6% 85.8%
3786336 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 44.0 3.47e-01 97.3% 97.0%
6655 241.12.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like › DUF1054 0.52 43.0 3.23e-01 97.3% 66.7%
3544618 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.52 36.0 3.49e-01 83.6% 63.5%
3989471 327.11.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KhpA-B_KH 0.52 37.0 3.61e-01 75.3% 100.0%
3719388 243.4.1.0 ↗ a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.52 43.0 3.03e-01 91.8% 88.4%
3611647 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.51 38.0 2.88e-01 80.8% 40.0%
3899113 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.50 42.0 3.43e-01 97.3% 86.7%