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AY616033.2__AAT37770.1__X__00006

Bact-Vir

AY616033.2__AAT37770.1__X__00006

Identity

Accession:
AY616033 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 353-408
PDB
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wvvB01 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.87 64.0 6.92e-01 100.0% 91.7%
1goiB03 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.85 63.0 6.62e-01 100.0% 86.3%
3wx7A02 2.10.10.90 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.84 69.0 5.67e-01 100.0% 51.6%
2rtsA00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.81 61.0 5.54e-01 100.0% 61.6%
1ed7A00 2.10.10.20 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 0.80 60.0 6.62e-01 94.6% 100.0%
1yueA02 2.10.10.40 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.67 58.0 5.71e-01 98.2% 93.4%
4oj5A02 2.10.10.80 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.61 52.0 4.89e-01 100.0% 83.1%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.61 44.0 4.12e-01 78.6% 97.2%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.54e-01 100.0% 72.7%
3tqqA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.59 50.0 4.16e-01 100.0% 72.6%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.57 49.0 3.34e-01 100.0% 61.0%
5tw4A02 2.30.140.20 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain 0.56 42.0 4.05e-01 87.5% 97.1%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.55 44.0 3.84e-01 100.0% 85.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.01e-01 100.0% 71.0%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 34.0 2.75e-01 82.1% 34.9%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 38.0 2.82e-01 83.9% 92.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5026481 64.3.1.3 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 0.89 65.0 6.90e-01 100.0% 86.0%
1322863 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 68.0 7.43e-01 96.4% 100.0%
4110715 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.87 68.0 6.68e-01 96.4% 78.0%
1322862 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.86 67.0 7.25e-01 96.4% 95.8%
3971347 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.86 68.0 6.77e-01 98.2% 81.0%
3972100 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.85 64.0 6.11e-01 100.0% 69.2%
2389402 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.85 63.0 6.43e-01 100.0% 81.5%
4444075 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.83 60.0 6.73e-01 98.2% 100.0%
1291025 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.81 61.0 5.54e-01 100.0% 61.6%
1694867 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.81 66.0 6.79e-01 98.2% 92.5%
4233290 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.80 62.0 6.53e-01 100.0% 94.0%
4009007 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.79 61.0 6.39e-01 98.2% 92.0%
3981632 70.4.1.9 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 0.76 48.0 5.47e-01 92.9% 90.0%
3976685 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.74 63.0 6.49e-01 100.0% 96.3%
4307941 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.73 67.0 6.65e-01 100.0% 98.3%
4009012 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.73 60.0 5.72e-01 100.0% 78.1%
4149799 64.3.1.0 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain 0.73 59.0 6.26e-01 98.2% 100.0%
4009008 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.72 63.0 6.37e-01 98.2% 96.4%
4051625 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.61 47.0 4.45e-01 98.2% 70.8%
3934136 304.31.1.0 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.57 50.0 3.54e-01 100.0% 50.6%
3281773 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.56 40.0 2.33e-01 100.0% 8.7%
2761575 51.1.1.2 beta sandwiches › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › DUF1958 0.55 41.0 3.96e-01 87.5% 97.1%
5070852 1.1.8.25 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › ARPP-1 0.54 47.0 3.85e-01 100.0% 58.1%
5012905 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 40.0 3.49e-01 82.1% 86.7%
4959950 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.53 45.0 3.89e-01 92.9% 64.7%
5042815 239.1.1.15 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf 0.53 45.0 4.01e-01 94.6% 67.5%
4966144 3454.1.1.9 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PF26687 0.53 47.0 4.31e-01 96.4% 81.4%
3394051 12.2.1.4 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Vanin_C 0.52 42.0 2.98e-01 94.6% 94.2%
3663290 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.50 37.0 3.02e-01 83.9% 81.7%
D2 high residues 467-603
PDB
D3 medium residues 14-25_71-110
PDB
D4 medium residues 111-164
PDB
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.88 79.0 4.59e-01 98.1% 23.0%
7b7aA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.88 80.0 4.71e-01 100.0% 15.0%
2pygA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.85 76.0 4.51e-01 98.1% 25.9%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.85 77.0 4.36e-01 100.0% 17.2%
3eqnA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.84 74.0 4.40e-01 94.4% 18.1%
7chuA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.84 77.0 4.57e-01 100.0% 26.7%
3eqnA02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.84 75.0 4.44e-01 98.1% 24.3%
3gq8A01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.83 78.0 4.42e-01 100.0% 18.3%
5olpA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.81 71.0 4.15e-01 98.1% 22.7%
4oj6C03 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 74.0 4.32e-01 100.0% 33.6%
3jurA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.80 72.0 4.18e-01 100.0% 21.8%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 69.0 4.51e-01 98.1% 38.5%
1h80B00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 70.0 4.09e-01 100.0% 20.7%
3ju4A01 3.30.750.60 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › Endosialidase, N-terminal extension domain 0.76 57.0 5.18e-01 79.6% 59.7%
1xovA01 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.67 44.0 3.05e-01 72.2% 20.9%
3qayA00 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.61 43.0 3.02e-01 75.9% 28.9%
1otgA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.59 41.0 3.14e-01 74.1% 72.0%
3hsiA02 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.56 46.0 3.17e-01 94.4% 31.4%
2kjqA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 3.34e-01 88.9% 57.1%
3isxA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 36.0 2.40e-01 74.1% 15.0%
2pw6A00 3.40.830.10 Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like 0.54 42.0 2.85e-01 92.6% 75.4%
1tqxA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 40.0 2.83e-01 90.7% 24.0%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 39.0 2.74e-01 75.9% 60.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1714446 207.2.1.66 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › WcaM 0.91 78.0 4.46e-01 92.6% 10.6%
3299980 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.89 82.0 4.72e-01 100.0% 13.5%
2546335 207.2.1.32 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › CatAgl_D2 0.88 82.0 4.75e-01 100.0% 14.4%
3987209 207.2.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.88 80.0 4.54e-01 98.1% 20.6%
3949141 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.88 80.0 4.60e-01 98.1% 17.0%
3191775 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.88 81.0 4.42e-01 100.0% 11.8%
3458182 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.87 79.0 5.11e-01 100.0% 25.3%
3824788 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.87 79.0 4.72e-01 100.0% 17.2%
5082766 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.87 80.0 4.77e-01 100.0% 19.4%
3195366 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.87 78.0 4.58e-01 98.1% 23.3%
3804144 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.86 79.0 4.54e-01 100.0% 12.6%
4855553 207.2.1.94 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim 0.86 78.0 4.64e-01 98.1% 29.0%
3804805 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.86 78.0 4.55e-01 100.0% 14.6%
3820891 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.85 77.0 4.52e-01 100.0% 14.8%
3455716 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.85 78.0 4.63e-01 100.0% 16.0%
3341224 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.85 77.0 4.53e-01 100.0% 14.2%
None 0.85 77.0 4.52e-01 100.0% 14.8%
3354845 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.85 77.0 4.51e-01 100.0% 14.2%
3674708 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.85 76.0 4.51e-01 100.0% 14.6%
3649226 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.85 77.0 4.48e-01 100.0% 16.8%
4626930 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.84 73.0 4.37e-01 94.4% 29.1%
185219 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.84 74.0 4.33e-01 94.4% 16.4%
3692334 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.84 73.0 4.25e-01 94.4% 28.7%
4014880 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.84 73.0 4.33e-01 94.4% 26.7%
4539832 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.84 77.0 4.65e-01 100.0% 26.3%
3670547 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.84 75.0 4.46e-01 100.0% 15.3%
4012053 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.83 75.0 4.42e-01 100.0% 23.0%
4446517 207.2.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.83 75.0 4.45e-01 100.0% 25.2%
3820657 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.83 74.0 4.30e-01 100.0% 12.8%
364252 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.83 78.0 4.43e-01 100.0% 18.4%
3206059 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.83 74.0 4.39e-01 100.0% 23.4%
4104747 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.83 74.0 4.32e-01 100.0% 19.3%
3828319 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.83 75.0 4.29e-01 98.1% 20.9%
5082245 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 76.0 4.31e-01 100.0% 20.8%
4355788 207.2.1.76 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim, Beta_helix 0.82 72.0 4.04e-01 98.1% 16.8%
4021613 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.82 74.0 4.37e-01 100.0% 23.4%
3326988 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.82 74.0 4.25e-01 98.1% 20.0%
3307314 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.81 72.0 4.19e-01 98.1% 23.6%
4449643 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.81 71.0 4.13e-01 98.1% 16.7%
377410 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.81 72.0 4.17e-01 98.1% 21.7%
3422718 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.81 72.0 4.21e-01 98.1% 25.0%
3294947 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.81 72.0 4.22e-01 98.1% 24.3%
3368264 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.81 72.0 4.14e-01 98.1% 23.1%
2139004 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.81 71.0 4.15e-01 98.1% 22.7%
3380520 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.81 73.0 4.22e-01 100.0% 23.6%
3307012 207.2.2.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin › Glyco_hydro_28 0.80 71.0 5.00e-01 98.1% 65.6%
1285029 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.80 71.0 3.98e-01 98.1% 22.9%
3287619 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.80 71.0 4.10e-01 98.1% 12.2%
4079489 207.2.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28,Pectate_lyase_3 0.80 70.0 4.12e-01 100.0% 18.4%
2041632 207.2.1.20 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.80 68.0 4.17e-01 94.4% 28.3%
1121177 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.79 69.0 4.51e-01 98.1% 38.5%
4012052 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.79 71.0 4.27e-01 100.0% 28.9%
3668060 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.76 66.0 4.28e-01 100.0% 28.8%
3365042 2004.1.1.43 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.57 43.0 3.22e-01 85.2% 53.3%
2137591 2002.1.1.8 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase 0.57 45.0 2.89e-01 94.4% 33.6%
3958296 7581.1.1.0 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like 0.56 35.0 2.71e-01 94.4% 29.2%
4201854 7579.1.1.25 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FSH1 0.54 42.0 2.87e-01 90.7% 82.6%
3164393 7523.1.1.15 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.52 35.0 3.02e-01 74.1% 40.9%
3925901 7579.1.1.25 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › FSH1 0.51 39.0 2.66e-01 87.0% 69.5%
D5 medium residues 165-209_229-274
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7chuA01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.85 81.0 5.20e-01 100.0% 44.4%
3zppA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.79 72.0 4.55e-01 98.9% 32.3%
1hg8A00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.77 71.0 4.64e-01 100.0% 35.0%
3vmvA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.75 69.0 4.62e-01 100.0% 34.0%
1qjvA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 67.0 4.47e-01 100.0% 51.8%
5gkqB01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.72 66.0 4.23e-01 100.0% 32.1%
5jlvC00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.64 51.0 4.99e-01 100.0% 78.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3252135 207.2.1.70 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Beta_helix 0.77 71.0 4.40e-01 100.0% 27.1%
4981824 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 70.0 5.12e-01 100.0% 60.0%
4969460 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.74 69.0 5.38e-01 100.0% 61.7%
4953589 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.73 68.0 4.33e-01 100.0% 26.9%
5072865 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.73 69.0 4.88e-01 100.0% 37.6%
5047146 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 65.0 5.10e-01 100.0% 47.6%
4981294 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 67.0 5.33e-01 100.0% 64.6%
5050988 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.71 63.0 4.38e-01 100.0% 31.9%
3428314 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.71 66.0 4.52e-01 100.0% 42.1%
4466879 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.69 62.0 4.05e-01 100.0% 63.3%
5050408 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.67 61.0 3.90e-01 100.0% 27.2%
4969187 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.66 60.0 4.42e-01 100.0% 40.4%
3702152 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.66 60.0 4.28e-01 100.0% 71.0%
3257166 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.64 56.0 3.92e-01 100.0% 47.6%
5069437 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.64 57.0 4.05e-01 100.0% 41.8%
3335252 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.62 54.0 4.24e-01 96.7% 63.6%
3575994 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.59 43.0 4.64e-01 92.3% 92.0%
4856486 207.9.1.5 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › LD_SV2 0.59 54.0 5.07e-01 100.0% 86.5%
D6 medium residues 210-228_275-347_419-463
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.78 73.0 4.79e-01 99.3% 51.3%
2uvfB02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.76 72.0 4.86e-01 100.0% 51.2%
5gkqB01 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.75 70.0 4.90e-01 99.3% 70.2%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.74 69.0 4.50e-01 99.3% 62.3%
1ogoX02 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.73 68.0 4.84e-01 99.3% 76.0%
3n6zA01 2.160.20.110 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.72 66.0 5.26e-01 100.0% 88.7%
1qjvA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 65.0 4.77e-01 100.0% 75.4%
4pmhA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.69 64.0 4.58e-01 98.5% 84.7%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.68 64.0 5.33e-01 100.0% 96.0%
2qyuA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.59 52.0 4.99e-01 94.9% 92.4%
1ea0A04 2.160.20.60 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Glutamate synthase, alpha subunit, C-terminal domain 0.59 54.0 4.30e-01 100.0% 87.7%
2bm5B00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.58 53.0 4.85e-01 99.3% 87.2%
4rcwA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.58 52.0 4.42e-01 100.0% 78.6%
2j8kA01 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.58 53.0 4.89e-01 100.0% 100.0%
1k8fA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.57 53.0 5.06e-01 100.0% 96.8%
1yy9A03 3.80.20.20 Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain 0.57 52.0 4.80e-01 100.0% 97.1%
2f3lA00 2.160.20.80 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › E3 ubiquitin-protein ligase SopA 0.56 49.0 4.97e-01 95.6% 99.2%
2ekdA00 3.40.50.11570 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF257 0.52 40.0 3.55e-01 81.0% 74.8%
5hc2B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 45.0 3.41e-01 97.1% 66.1%
4xqcA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 39.0 3.65e-01 82.5% 95.5%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4446517 207.2.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3,Beta_helix 0.79 74.0 5.19e-01 99.3% 68.8%
3587303 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.79 74.0 5.01e-01 99.3% 70.9%
4945679 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.77 72.0 5.59e-01 97.8% 75.2%
4855553 207.2.1.94 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD, Pect-lyase_RHGA_epim 0.77 72.0 5.28e-01 99.3% 75.1%
4944883 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.77 71.0 4.84e-01 97.8% 43.7%
5054710 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.75 70.0 5.38e-01 97.8% 69.6%
4970402 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.75 70.0 5.41e-01 97.8% 72.5%
4954201 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.75 69.0 5.15e-01 98.5% 66.3%
4299653 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.74 70.0 5.01e-01 100.0% 59.7%
5033195 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.73 69.0 5.53e-01 98.5% 82.8%
5034452 207.2.1.22 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Beta_helix 0.73 69.0 5.49e-01 99.3% 76.7%
5060473 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.73 68.0 4.69e-01 99.3% 53.3%
4981313 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.73 67.0 5.46e-01 97.8% 74.2%
4968174 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.72 68.0 4.85e-01 99.3% 59.7%
3610742 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.72 68.0 4.88e-01 99.3% 64.1%
3703549 207.2.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.72 67.0 4.95e-01 100.0% 69.4%
3668060 207.2.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.72 65.0 5.18e-01 94.9% 86.8%
3705677 207.2.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.71 66.0 4.40e-01 99.3% 54.3%
3703718 207.2.1.56 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DGF-1_N 0.71 66.0 4.94e-01 100.0% 71.1%
3680585 207.2.1.3 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.70 66.0 5.33e-01 99.3% 80.7%
4856486 207.9.1.5 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › LD_SV2 0.68 47.0 5.18e-01 94.2% 86.5%
5062382 207.2.1.13 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD 0.68 64.0 5.14e-01 99.3% 79.2%
4969960 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.65 44.0 5.23e-01 78.1% 100.0%
3983450 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.64 50.0 5.47e-01 95.6% 98.3%
4981810 207.2.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.64 60.0 5.10e-01 100.0% 78.1%
3328868 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 41.0 4.26e-01 86.9% 68.5%
4024460 208.7.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein 0.60 46.0 4.86e-01 100.0% 89.6%
4008184 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.60 55.0 4.59e-01 100.0% 76.1%
3621708 207.9.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.59 54.0 4.97e-01 99.3% 87.6%
1788824 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.58 53.0 4.45e-01 100.0% 74.7%
3715374 207.14.1.2 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › DGF-1_beta-sheet 0.58 39.0 4.45e-01 87.6% 89.5%
3268714 207.9.1.7 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3 0.57 52.0 4.46e-01 100.0% 72.4%
3337588 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.56 49.0 4.82e-01 95.6% 90.7%
3327690 207.9.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide 0.56 50.0 4.75e-01 97.8% 83.1%