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AY616446.1AAU85086.1X__00038

Bact-Vir

AY616446.1__AAU85086.1__X__00038

Identity

Accession:: AY616446 ↗
Kingdom:: phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Jarrellvirus› Bacillus_phage_BCASJ1c

TaxID: 294382

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-94

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06810.18 best	Phage_scaffold	69.1	6.30e-19	100.0%	52.9%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pmsC00	6.10.140.920	Special › Helix non-globular › Helix Hairpins ›	0.86	63.0	5.97e-01	75.5%	65.1%
3nyjA00	1.20.120.770	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain	0.83	68.0	5.38e-01	86.2%	47.5%
5fmnA00	1.20.58.1000	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer	0.77	48.0	5.04e-01	70.2%	68.6%
4mtxD00	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.76	56.0	5.64e-01	77.7%	100.0%
4gouA03	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.72	50.0	3.80e-01	70.2%	77.2%
6xkyA01	1.20.1330.10	Mainly Alpha › Up-down Bundle › f41 fragment of flagellin, N-terminal domain › f41 fragment of flagellin, N-terminal domain	0.70	58.0	4.64e-01	90.4%	50.3%
3l0iA01	1.20.120.1520	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.62	52.0	4.25e-01	96.8%	48.9%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3494010	3755.3.1.0 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin	0.85	79.0	5.59e-01	100.0%	90.9%
3819233	4006.1.1.1 ↗	alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF	0.81	56.0	5.19e-01	71.3%	58.3%
4311810	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.81	57.0	6.27e-01	73.4%	92.0%
4349607	192.7.1.2 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N	0.79	60.0	5.65e-01	79.8%	67.3%
3766955	192.7.1.17 ↗	alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FAM186A-B_C	0.77	71.0	6.07e-01	100.0%	66.2%
3339561	605.1.1.1 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA	0.74	58.0	5.70e-01	84.0%	80.0%
3294437	5086.1.1.110 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA	0.74	54.0	5.79e-01	76.6%	90.0%
3167364	2004.1.1.481 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_29	0.70	58.0	3.71e-01	87.2%	23.6%
5070059	3834.1.1.25 ↗	alpha bundles › TcA alpha pore-forming domain › TcA alpha pore-forming domain › TcA alpha pore-forming domain › DUF7121	0.68	54.0	3.98e-01	86.2%	89.2%
None	—		0.50	39.0	3.86e-01	100.0%	77.1%

D2 medium residues 95-153

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06810.18 best	Phage_scaffold	72.0	8.50e-20	100.0%	34.1%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3v33B00	3.40.50.11980	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.70	57.0	4.21e-01	91.5%	91.9%
3gruA02	1.10.8.100	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain	0.62	46.0	4.12e-01	81.4%	75.6%
2zj2A04	1.10.3380.20	Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold ›	0.61	41.0	3.04e-01	71.2%	68.3%
2yb1A02	1.10.150.650	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.59	45.0	4.27e-01	93.2%	68.5%
6h9dA00	1.10.530.40	Mainly Alpha › Orthogonal Bundle › Lysozyme ›	0.58	45.0	3.49e-01	89.8%	36.5%
6gitA02	3.60.21.10	Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases	0.55	44.0	2.74e-01	88.1%	93.6%
1nu7D02	1.20.120.760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle, domain 2	0.51	42.0	3.42e-01	100.0%	89.8%
1ur3M00	3.20.20.100	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain	0.51	36.0	2.37e-01	78.0%	38.7%
3pqkA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	35.0	2.98e-01	72.9%	81.8%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3624719	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.55	45.0	2.91e-01	96.6%	33.9%
4863404	243.1.1.10 ↗	a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL	0.51	40.0	3.19e-01	93.2%	88.5%
3925974	101.1.1.76 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2	0.50	39.0	3.33e-01	86.4%	78.0%