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AY625898.1__AAT47209.1__2__00002
Bact-VirAY625898.1__AAT47209.1__2__00002
Identity
- Accession:
- AY625898 ↗
- Kingdom:
- phage
Quality
71.6
mean pLDDT
Taxonomy
TaxID: 2679904
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-82
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1psyA01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.66 | 49.0 | 4.47e-01 | 81.7% | 92.0% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.66 | 50.0 | 4.84e-01 | 100.0% | 74.1% |
| 1gzsB00 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.64 | 55.0 | 4.28e-01 | 100.0% | 78.2% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 51.0 | 4.83e-01 | 100.0% | 72.4% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 54.0 | 4.72e-01 | 100.0% | 89.5% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.62 | 54.0 | 5.28e-01 | 100.0% | 91.0% |
| 3uwcA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 42.0 | 3.37e-01 | 73.2% | 80.5% |
| 1tjcA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 35.0 | 3.18e-01 | 77.5% | 47.4% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 40.0 | 3.62e-01 | 100.0% | 53.8% |
| 3tp3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 47.0 | 3.80e-01 | 98.6% | 59.5% |
| 2l22A01 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.54 | 45.0 | 4.16e-01 | 95.8% | 72.5% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 39.0 | 3.65e-01 | 93.0% | 59.6% |
| 5ejdA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.53 | 43.0 | 4.26e-01 | 95.8% | 86.7% |
| 1pu6A01 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.53 | 45.0 | 4.12e-01 | 95.8% | 87.2% |
| 6yttA01 | 1.10.8.190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 | 0.53 | 38.0 | 3.43e-01 | 93.0% | 54.0% |
| 2l9fA00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.52 | 44.0 | 4.00e-01 | 97.2% | 69.6% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.52 | 41.0 | 4.06e-01 | 95.8% | 82.3% |
| 1l6nA02 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.51 | 40.0 | 3.28e-01 | 84.5% | 90.8% |
| 1np7A02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 40.0 | 3.38e-01 | 95.8% | 50.4% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.51 | 41.0 | 4.30e-01 | 100.0% | 100.0% |
| 7x4oB01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 39.0 | 3.43e-01 | 84.5% | 82.9% |
| 2cg5B00 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.51 | 40.0 | 4.09e-01 | 90.1% | 87.3% |
| 4ohcC00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 44.0 | 3.20e-01 | 100.0% | 84.4% |
| 5c8aA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.51 | 40.0 | 3.96e-01 | 100.0% | 82.1% |
| 4j3cB02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.50 | 42.0 | 3.32e-01 | 100.0% | 42.4% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5043888 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 56.0 | 5.86e-01 | 98.6% | 89.2% |
| 5021785 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.63 | 52.0 | 3.32e-01 | 100.0% | 17.6% |
| 5030164 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.61 | 53.0 | 5.39e-01 | 98.6% | 98.6% |
| 3398087 | 4310.1.1.1 ↗ | alpha arrays › Dcp2 box A domain › Dcp2 box A domain › Dcp2 box A domain › DCP2 | 0.61 | 53.0 | 4.86e-01 | 98.6% | 85.3% |
| 3877871 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.60 | 52.0 | 3.49e-01 | 100.0% | 25.4% |
| 3724335 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 37.0 | 3.59e-01 | 100.0% | 52.9% |
| 5053761 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 50.0 | 4.90e-01 | 100.0% | 91.3% |
| 3680206 | 171.1.1.4 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 | 0.58 | 40.0 | 3.24e-01 | 74.6% | 56.8% |
| 4946527 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 51.0 | 4.94e-01 | 100.0% | 90.0% |
| 4945030 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.56 | 50.0 | 4.37e-01 | 98.6% | 69.5% |
| 3727606 | 103.1.1.3 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N | 0.54 | 38.0 | 3.55e-01 | 77.5% | 57.8% |
| 147982 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.54 | 45.0 | 3.97e-01 | 95.8% | 62.9% |
| 4136145 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.53 | 43.0 | 4.16e-01 | 97.2% | 78.8% |
| 4012391 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.52 | 43.0 | 4.21e-01 | 97.2% | 83.7% |
| 4952939 | 148.1.3.251 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647 | 0.52 | 41.0 | 4.18e-01 | 98.6% | 90.0% |
| 3820903 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 37.0 | 2.29e-01 | 94.4% | 12.6% |
| 3188662 | 132.1.1.1 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding | 0.51 | 42.0 | 4.09e-01 | 95.8% | 80.7% |
| 3471396 | 604.6.1.0 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain | 0.50 | 42.0 | 3.81e-01 | 91.5% | 75.8% |
| 3787124 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 44.0 | 2.79e-01 | 100.0% | 45.3% |
D2
high
residues 91-134
Domain cluster:
rep: MH128984.1__AWD90823.1__X__00032__D52-96