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AY682195.1__AAV35845.1__orf25__00025

Bact-Vir

AY682195.1__AAV35845.1__orf25__00025

Identity

Accession:
AY682195 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Salchichonvirus› Lactobacillus_phage_LP65

TaxID: 2892344

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-61
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.67 46.0 4.29e-01 96.3% 56.3%
5ujeA01 3.30.1760.10 Alpha Beta › 2-Layer Sandwich › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 › Conserved hypothetical protein from pyrococcus furiosus pfu- 392566-001, domain 2 0.65 54.0 4.33e-01 94.4% 55.9%
3zq5A03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.64 43.0 3.12e-01 70.4% 66.7%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.62 52.0 4.39e-01 96.3% 85.4%
2hyxA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 45.0 3.41e-01 100.0% 34.4%
6jebA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.58 46.0 4.11e-01 85.2% 73.3%
4ehoB03 3.30.450.270 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain 0.58 42.0 2.94e-01 77.8% 54.7%
1r9fA01 3.30.390.180 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 0.58 44.0 3.49e-01 81.5% 52.3%
1nrjA00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 45.0 3.25e-01 83.3% 44.2%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 3.51e-01 100.0% 45.3%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.57 49.0 3.25e-01 100.0% 98.3%
5zi2A02 3.90.110.10 Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 0.57 43.0 3.02e-01 85.2% 61.3%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.56 49.0 4.48e-01 100.0% 79.7%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 49.0 3.61e-01 100.0% 42.5%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 42.0 3.35e-01 100.0% 39.0%
2okmA00 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 49.0 3.57e-01 100.0% 39.7%
4kx7A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.64e-01 100.0% 53.6%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.54 43.0 3.13e-01 100.0% 32.9%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.53 46.0 2.61e-01 100.0% 94.6%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 46.0 3.83e-01 100.0% 90.6%
2wcyA02 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 34.0 3.15e-01 100.0% 47.5%
3m5gA02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.51 41.0 2.73e-01 100.0% 22.6%
1kkeA02 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 44.0 3.23e-01 100.0% 36.9%
6x5vA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 42.0 3.56e-01 100.0% 54.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942871 633.23.1.11 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA 0.65 53.0 3.89e-01 92.6% 98.1%
3715519 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 45.0 2.99e-01 74.1% 46.8%
3975734 601.1.2.89 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PqiA 0.63 52.0 3.81e-01 94.4% 71.6%
3964444 601.1.2.89 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PqiA 0.63 51.0 3.72e-01 94.4% 69.4%
3164792 633.23.1.11 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PqiA 0.63 50.0 3.70e-01 94.4% 70.0%
3343923 109.4.1.1156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.62 49.0 3.06e-01 87.0% 16.4%
4994897 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 46.0 3.41e-01 79.6% 54.1%
3587556 284.2.1.0 ↗ a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.60 50.0 4.67e-01 96.3% 87.1%
3351960 109.4.1.2979 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.59 46.0 2.63e-01 87.0% 8.1%
3926791 11.1.1.854 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7583 0.58 52.0 4.21e-01 100.0% 58.0%
3874516 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.56 45.0 2.79e-01 92.6% 30.6%
3718648 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 41.0 3.32e-01 77.8% 64.8%
3648991 2492.1.1.39 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DYW_deaminase 0.56 46.0 3.54e-01 94.4% 65.4%
3831039 109.4.1.1599 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase 0.56 41.0 2.31e-01 87.0% 6.1%
None — 0.55 47.0 3.52e-01 96.3% 66.7%
5012954 632.2.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.55 43.0 3.14e-01 85.2% 32.1%
None — 0.55 47.0 3.53e-01 96.3% 69.6%
3452954 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.54 47.0 2.68e-01 98.1% 21.2%
3816857 223.1.1.84 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PHY+GAF 0.54 43.0 2.56e-01 85.2% 49.9%
3322777 109.4.1.1738 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.54 46.0 2.78e-01 96.3% 24.9%
3319860 109.4.1.2173 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif 0.53 44.0 2.80e-01 94.4% 30.8%
3934699 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 46.0 3.21e-01 100.0% 33.5%
3374645 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.53 42.0 2.41e-01 87.0% 11.3%
4026065 221.1.1.177 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › SNAPC3 0.51 42.0 3.20e-01 100.0% 86.7%
3824591 109.4.1.1476 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.51 39.0 2.27e-01 87.0% 11.0%
4943640 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 45.0 3.32e-01 98.1% 61.7%