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AY682195.1__AAV35915.1__orf95__00095

Bact-Vir

AY682195.1__AAV35915.1__orf95__00095

Identity

Accession:
AY682195 ↗
Kingdom:
phage

Quality

76.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-72
PDB
D2 high residues 265-342_378-439
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zc1A02 3.10.330.10 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 35.0 4.35e-01 96.4% 100.0%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 35.0 4.19e-01 79.3% 94.6%
1vraB02 3.10.20.340 Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain 0.55 39.0 4.10e-01 98.6% 78.9%
5a48B00 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.54 31.0 3.63e-01 87.1% 81.2%
1s3rA04 2.60.40.1430 Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 0.54 33.0 3.70e-01 87.9% 77.5%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.52 30.0 3.83e-01 72.9% 98.7%
3aqpA02 3.30.70.3220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 43.0 4.12e-01 93.6% 98.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957578 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.89 55.0 6.92e-01 96.4% 97.8%
1870475 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.85 52.0 6.45e-01 97.9% 95.6%
4453960 3228.1.1.2 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate_J_C 0.82 47.0 6.15e-01 95.7% 100.0%
5004557 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.81 61.0 6.89e-01 97.1% 99.1%
3943567 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.80 55.0 6.50e-01 95.0% 98.0%
5002740 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.78 58.0 6.58e-01 97.1% 97.3%
3946544 3228.1.1.0 a+b two layers › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III › Baseplate structural protein gp6 C-terminal domain III 0.75 54.0 6.16e-01 99.3% 98.1%
3313414 229.1.1.7 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.66 42.0 5.07e-01 98.6% 98.9%
3395489 229.1.1.7 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › TRIP13_N 0.66 42.0 4.98e-01 100.0% 97.8%
3871648 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.60 42.0 4.66e-01 100.0% 94.3%
3489796 229.1.1.0 a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like 0.59 43.0 4.86e-01 99.3% 100.0%
3275444 101.1.2.377 alpha arrays › HTH › HTH › winged helix domain › MCM5_C 0.58 29.0 3.96e-01 75.0% 100.0%
3550974 101.1.2.377 alpha arrays › HTH › HTH › winged helix domain › MCM5_C 0.58 31.0 3.83e-01 82.9% 84.5%
3936341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 31.0 3.82e-01 84.3% 96.5%
3389142 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 31.0 3.78e-01 87.9% 96.5%
4310028 101.1.2.137 alpha arrays › HTH › HTH › winged helix domain › OST-HTH 0.51 30.0 3.78e-01 80.7% 100.0%
3386850 304.28.2.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB TolC docking domain › ACR_tran 0.51 29.0 3.70e-01 78.6% 97.5%
3607265 101.1.2.377 alpha arrays › HTH › HTH › winged helix domain › MCM5_C 0.51 28.0 3.49e-01 85.7% 92.5%
4977033 298.1.1.23 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Semialdhyde_dhC_1 0.50 39.0 3.68e-01 82.9% 87.4%
D3 medium residues 81-166
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04865.20 best Baseplate_J 43.1 6.60e-11 95.3% 90.0%
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 56.0 5.50e-01 100.0% 93.6%
6oauA02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.60 52.0 4.69e-01 98.8% 70.5%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.60 44.0 3.75e-01 100.0% 45.9%
4nreA01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.60 52.0 4.74e-01 98.8% 77.5%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 49.0 4.52e-01 90.7% 79.3%
3v98B01 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.59 50.0 4.58e-01 97.7% 70.9%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.58 50.0 4.55e-01 100.0% 75.8%
4il7A00 2.60.120.1300 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 4.06e-01 98.8% 75.3%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 43.0 3.95e-01 98.8% 63.1%
1uisA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 43.0 3.25e-01 83.7% 87.1%
1g43A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.56 47.0 3.98e-01 98.8% 86.3%
4xjcF00 2.70.40.10 Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) 0.56 49.0 3.97e-01 100.0% 55.6%
3nqkA01 2.60.40.1740 Mainly Beta › Sandwich › Immunoglobulin-like › hypothetical protein (bacova_03559) 0.55 48.0 4.11e-01 100.0% 76.6%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.20e-01 98.8% 80.8%
2q30A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 35.0 3.53e-01 100.0% 62.5%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.93e-01 97.7% 54.9%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.96e-01 89.5% 82.6%
3ndzE00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 4.15e-01 98.8% 86.0%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 32.0 3.06e-01 98.8% 49.5%
2kltA00 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.51 44.0 3.73e-01 100.0% 80.8%
4qhpA04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.51 43.0 4.15e-01 97.7% 87.1%
3fq4B01 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.51 43.0 3.97e-01 98.8% 78.4%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 4.07e-01 96.5% 86.1%
6lofA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 40.0 3.42e-01 91.9% 85.2%
2cjsA01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 43.0 3.67e-01 100.0% 81.0%
2dpkA01 2.60.40.2030 Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain 0.50 43.0 3.92e-01 100.0% 81.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3977754 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.87 82.0 7.95e-01 100.0% 90.5%
4514735 1049.2.1.4 alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J 0.86 75.0 5.66e-01 100.0% 42.1%
4957576 1.1.8.21 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J 0.83 77.0 7.42e-01 98.8% 91.6%
1562394 1.1.8.6 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GlxA 0.80 74.0 6.79e-01 100.0% 94.4%
5055267 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 56.0 5.29e-01 91.9% 82.9%
3566270 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.65 56.0 5.58e-01 100.0% 92.2%
5055266 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 55.0 4.81e-01 100.0% 70.0%
5046884 1.1.8.1 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.64 55.0 5.50e-01 100.0% 93.3%
3202395 11.1.1.966 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26153 0.62 54.0 4.90e-01 100.0% 87.5%
5083379 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 54.0 5.39e-01 100.0% 98.9%
4929758 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 51.0 4.32e-01 98.8% 76.8%
4873884 10.10.1.1 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT 0.60 52.0 4.69e-01 98.8% 77.5%
5013082 11.1.1.51 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LEA_2 0.59 53.0 4.55e-01 98.8% 75.6%
3455988 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.29e-01 100.0% 75.9%
3938304 10.12.1.21 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R 0.54 39.0 3.06e-01 76.7% 69.7%
3268650 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 46.0 4.02e-01 100.0% 62.9%
4028004 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 42.0 3.71e-01 97.7% 55.0%
4074950 10.12.1.63 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MPI_cupin_dom 0.54 33.0 3.34e-01 100.0% 58.9%
3833446 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 47.0 2.77e-01 100.0% 16.4%
5043722 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.22e-01 100.0% 79.0%
3580145 11.1.1.798 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_1st 0.53 45.0 3.70e-01 100.0% 64.0%
3797463 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 3.93e-01 100.0% 65.7%
5060540 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 3.83e-01 100.0% 78.7%
3483414 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.90e-01 98.8% 84.4%
3895047 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.52 44.0 3.69e-01 98.8% 79.4%
3494631 11.1.1.1195 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta, Cadherin_3 0.52 44.0 3.37e-01 100.0% 42.7%
4936167 75.1.1.0 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.52 35.0 3.12e-01 70.9% 98.5%
4959654 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.51 44.0 4.16e-01 100.0% 82.9%
3572142 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.51 44.0 4.11e-01 100.0% 83.6%
2822348 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.51 32.0 3.28e-01 93.0% 64.3%
3621989 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.51 43.0 3.75e-01 98.8% 62.1%
366073 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.51 43.0 3.97e-01 98.8% 78.4%
3579556 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.51 42.0 3.48e-01 97.7% 47.4%
3771662 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.51 43.0 4.06e-01 98.8% 83.6%
3855982 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.50 43.0 3.99e-01 100.0% 80.0%
371073 11.1.1.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Calx-beta 0.50 42.0 4.02e-01 98.8% 81.6%
3447236 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.50 43.0 3.70e-01 100.0% 76.0%
D4 medium residues 179-263
PDB