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AY682195.1__AAV35938.1__orf118__00118
Bact-VirAY682195.1__AAV35938.1__orf118__00118
Identity
- Accession:
- AY682195 ↗
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Salchichonvirus›
Lactobacillus_phage_LP65
TaxID: 2892344
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-96
Domain cluster:
rep: MH729379.1__AXY81183.1__AVP_67__00067__D28-96
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.63 | 27.0 | 2.83e-01 | 93.8% | 40.9% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 32.0 | 3.63e-01 | 99.0% | 74.6% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.55 | 37.0 | 3.42e-01 | 78.1% | 53.3% |
| 2dmyA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 32.0 | 3.24e-01 | 79.2% | 58.8% |
| 4fxdA06 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.52 | 47.0 | 3.95e-01 | 100.0% | 68.1% |
| 1rqgA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.51 | 40.0 | 3.42e-01 | 83.3% | 100.0% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3750184 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.72 | 35.0 | 3.99e-01 | 77.1% | 60.0% |
| 3090474 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.68 | 52.0 | 4.57e-01 | 80.2% | 66.7% |
| 4481009 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 40.0 | 2.55e-01 | 87.5% | 29.1% |
| None | — | 0.51 | 40.0 | 2.58e-01 | 87.5% | 24.7% | |
| 5040622 | 2005.1.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 | 0.51 | 40.0 | 2.73e-01 | 88.5% | 42.5% |
| 4980554 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.50 | 40.0 | 2.79e-01 | 88.5% | 36.5% |
| 5083870 | 375.1.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1 | 0.50 | 40.0 | 3.05e-01 | 88.5% | 47.8% |